Pairwise Alignments

Query, 412 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 644 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis JJ

 Score = 79.3 bits (194), Expect = 3e-19
 Identities = 68/234 (29%), Positives = 95/234 (40%), Gaps = 67/234 (28%)

Query: 15  LVSANATDIQYNWTINESGTYTLSEDMLVNYYGIQITASNVVLDGNNNKLISNNS----- 69
           L   + TD +  +  +ESGTY L E++     GI I ASN+ +DGN   L  N S     
Sbjct: 406 LTQDDFTDNETGYIASESGTYVLDENITCAM-GIGINASNITIDGNGFYLTGNVSERSEY 464

Query: 70  -EGTGIYIRSNYENYTENVTIKNLNIENWSIGIKI-----DGDVKNITIKNC-------- 115
            E TGIY  S   N+ EN+T+KN+ I  W  GI +     D ++ N ++ NC        
Sbjct: 465 WEDTGIYALSG--NF-ENITVKNVVITEWYYGIAVPLHWEDYEITNFSVINCTFLNNDWM 521

Query: 116 -------------------------------------EFENNEYFLKSYATEQYFYLNTI 138
                                                EF  NEY L +     + YLN  
Sbjct: 522 GIGEMYVFGGEITNSTFKNSYYGVMLPYTENIIITGNEFSGNEYGLYAGGVNNWIYLNKF 581

Query: 139 HENQE-----VMSNSPLASPKLVYNYGGNEYTYRLGNYYVGYTGTEAEDEGVYN 187
             N +      +S +   SP + Y Y G  Y  R+GNYY    GT   + G+Y+
Sbjct: 582 ENNSQNIDFRSLSGNYFHSPVVKYEYNGKVYEGRVGNYYGEELGT--SNAGIYD 633



 Score = 51.6 bits (122), Expect = 7e-11
 Identities = 66/241 (27%), Positives = 101/241 (41%), Gaps = 41/241 (17%)

Query: 26  NWTINESGTYTLSEDMLVNYYG--IQITASNVVLDGN------------NNKLISNN--- 68
           N T  +    TL E+ +V Y G   +IT  N  +  N             +  I+NN   
Sbjct: 189 NCTNGQIKNLTLDENAVVIYIGDSSEITVENCTIKPNIYEEYALYLINSESCSITNNTFG 248

Query: 69  -SEGTGI-YIRSNYENYTENVTIKNLNIENWSIGIKIDGDVKNITIKNCEFEN---NEYF 123
            SE T    IRS+Y N   N+TI    +   ++G ++ G + N +I    FEN       
Sbjct: 249 ISENTDFGVIRSHYSN---NITISGNTLNEMAVGFRLYG-ITNSSIFENTFENIAGPTIV 304

Query: 124 LKSYATEQYFYLNTIHENQEVM-SNSPLASPKLV-YNYGGNEYTYRLGNYYVGYTGTEAE 181
            +   +E Y YLN       V+ +N    SP  V Y Y G  Y+   GNY+  Y  T A 
Sbjct: 305 EEGSVSEVYVYLNNFINCPIVLVTNITFNSPTNVSYAYNGTVYSGIAGNYWSDYNETNAT 364

Query: 182 -DEGVYNFVHNEEESFIRAFDIYPLI---------KTPENYKILKVLYPESDSENGVVVA 231
            ++G+++  H   E      D YPL+         +TP +  I       +D+E G + +
Sbjct: 365 INDGIWSIPHTIME---LVNDSYPLVEPANPETKEETPNDGLIHLTQDDFTDNETGYIAS 421

Query: 232 D 232
           +
Sbjct: 422 E 422