Pairwise Alignments

Query, 717 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 1028 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis JJ

 Score =  194 bits (493), Expect = 2e-53
 Identities = 120/335 (35%), Positives = 185/335 (55%), Gaps = 44/335 (13%)

Query: 406  ENSLNNTGKGYYFANFSNGTKTSIISEFGIIKYSSYPNGEEINTLNSYACNNSTLFK--F 463
            +N++   G   Y      G + S IS   +I      NGE+   L  Y    S++F+  F
Sbjct: 715  DNAVTTAGYEAYGIYIEYGAENSNISGNTVIT-----NGEDTYALYLYDVTTSSIFENTF 769

Query: 464  YSKTAPKLTNSSIDILDSKVIVSIHADDVDDDLWGVKVYFDGLNEYYSLTRADQTFNTSF 523
             S       NSS +          + +++D  L       +G + Y+    + +T   S+
Sbjct: 770  TSGDYAIYINSSEEN-------RFYLNNIDGLL------NNGTDNYFV---SSETITYSY 813

Query: 524  NKSMFT--YGEHYAIFEAFDGSGN-----------TNKSEKV--------YFEILAPATT 562
            N   +T   G ++  ++  D +G+           TN ++ +            +AP+ +
Sbjct: 814  NGKSYTSILGNYWVGYDESDTNGDGIIDTPYTLNGTNDTKPLADMWNDGEIGNYVAPSRS 873

Query: 563  SRSTTSHYSSDLSDGIDSGTIKRAISNSNVIYGSDIDEEFALNLRENVQNGNNYELSKDT 622
            S  +   Y SD+SD I+S  IK  +S++ V++G+ IDE++A+ LRE V + N Y +S + 
Sbjct: 874  SGGSGRSYDSDISDEIESKVIKNFVSSATVLFGNGIDEQYAVQLRERVTDANGYTISGNA 933

Query: 623  IIVGGPESNGFADKYNNEFEIQITNDYPGENKGVIQIQTIEVRDGNIIKPYQVIYIAGSD 682
            +IVGGP +NGFA +YN++FE+ I+NDYPGEN+G+IQ+  I+   G II+ Y ++YIAGSD
Sbjct: 934  VIVGGPNANGFAKEYNDQFEMPISNDYPGENRGIIQVMDIQDNSGTIIRSYTIVYIAGSD 993

Query: 683  RFGTLAALEYFKTLDELPKGPITVEWNDNGIIVVE 717
            R GT AALEYFKTLDELP+GPI +EW  NG +VVE
Sbjct: 994  RLGTQAALEYFKTLDELPEGPIMIEWTANGPVVVE 1028



 Score = 36.2 bits (82), Expect = 8e-06
 Identities = 89/413 (21%), Positives = 154/413 (37%), Gaps = 91/413 (22%)

Query: 18  SISANFSESIDDGTYIYHNFTKADAEKIGVDENTTDYEKNETIQTFSDSDDDIYVMGCFL 77
           +I+AN S+    G Y+Y+  T           NTT  +   TI + SDS+D+ Y +  + 
Sbjct: 473 TITANASDEAF-GVYLYYYVT-----------NTTISDNQVTIISESDSEDEAYGIYLYY 520

Query: 78  PTKEELMSMSEQITVVESVSETANLSNNTYLDLSKDPYFPLVGDQGKIGSCASWAIVYYA 137
             +  ++S +  IT         N S+    D   D     + D           I  Y 
Sbjct: 521 GAETSIISSNSVITY-------GNYSHGIEFDDYGDIINVTISDN---------TITTYG 564

Query: 138 NSYLQAKIHNYDLKGADSLKCFNPMWAYNKINDGKNEGSGLIGNLNLISRLGSATYETMP 197
                  I  YD+        ++ +   N +N   N+  G+    ++        Y++  
Sbjct: 565 EDAYGISIE-YDM--------YDSIITGNTVNTFGNDSYGIYTYYDI--------YDSKI 607

Query: 198 PTNNYTIWGDYEAWLEAPQYRITGYEISSTNNT---------------DVMKSWLNEGSV 242
             N  T +GDY   +E   Y    Y ++   NT               D+  S +   +V
Sbjct: 608 SDNTITTYGDYAYGIEL--YDDDYYNVTLAQNTVTTYGEDAYGISIEYDMYDSIITGNTV 665

Query: 243 IIIAMRGEDIWTF---DNNSILSDFDQSHDEADHAQAVIGYDD-----SISEDNETGA-- 292
                    I+T+    N +I S+   +  E   A  +  YDD     +IS++  T A  
Sbjct: 666 NTFGNDSYGIYTYYSVTNTTISSNTVTT--EGSWAYGIYIYDDPLIDSTISDNAVTTAGY 723

Query: 293 --FKVMNSWGANWS--------PNGDGSY--YITYKAMANLDYTTCYRITGAVY-NTSES 339
             + +   +GA  S         NG+ +Y  Y+     +++   T      A+Y N+SE 
Sbjct: 724 EAYGIYIEYGAENSNISGNTVITNGEDTYALYLYDVTTSSIFENTFTSGDYAIYINSSEE 783

Query: 340 HP----ELIGVVKFDSDNKGTKDQNITFGIGNKSNISGSVDIYEGMDENGGNG 388
           +      + G++   +DN     + IT+    KS  S   + + G DE+  NG
Sbjct: 784 NRFYLNNIDGLLNNGTDNYFVSSETITYSYNGKSYTSILGNYWVGYDESDTNG 836