Pairwise Alignments

Query, 717 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 1273 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis JJ

 Score =  194 bits (492), Expect = 3e-53
 Identities = 126/342 (36%), Positives = 186/342 (54%), Gaps = 43/342 (12%)

Query: 403  SEFENSLNNTGKGYYFANFSNGTKTSIISEFGIIKYSSYPNGEEINTLNSYACNNSTLFK 462
            S++    +  G+G Y   F+N   T + SE+GI       + +E  +  SY         
Sbjct: 948  SDYAIDFDGEGEGAYATVFNN---TVLASEYGI----RLDDCDEDYSNISYNT------- 993

Query: 463  FYSKTAPKLTNSSIDILDSKVIVSIHADDVDDDLWGVKVYFDGLNEYYSLTRADQTFN-T 521
             YS   P +    +   +  +   I+ D V+  + G+     G N + S  + +  +N  
Sbjct: 994  VYSSEYPLIIGDEVTGCNIYLNNFIYTDTVN--ISGITPGETGKNSFLSPFKIEYKYNGN 1051

Query: 522  SFNKSMFTYGEHYAIFEA-FDGSGNTN-----KSEKVYFEI---------------LAPA 560
            S++  +  Y   Y+  +A  +G G+T        E  Y E                  P 
Sbjct: 1052 SYSNFLGNYWSDYSGTDADANGIGDTYYLYGCDDESDYLENDTAPLIGMWGIDLIPYTPV 1111

Query: 561  TTSRSTTS-----HYSSDLSDGIDSGTIKRAISNSNVIYGSDIDEEFALNLRENVQNGNN 615
            TT  + +S      Y SD+SD IDS  IK  +S++ V++G++ID++FA  LRE +QN   
Sbjct: 1112 TTHTTRSSGGGGRSYDSDISDEIDSKVIKNFVSSATVLFGNEIDQQFAEELRERIQNAEG 1171

Query: 616  YELSKDTIIVGGPESNGFADKYNNEFEIQITNDYPGENKGVIQIQTIEVRDGNIIKPYQV 675
            +++S + +IVGGP++N FA +YN++FE+ I+NDYPGENKGVIQ+ TI+   G I+K Y +
Sbjct: 1172 FKISGNAVIVGGPKANPFAREYNDQFEMPISNDYPGENKGVIQVMTIQDNSGKIVKSYTI 1231

Query: 676  IYIAGSDRFGTLAALEYFKTLDELPKGPITVEWNDNGIIVVE 717
            +YIAGSDR GT AALEYFKTLDELP GPI VEW  NG +VVE
Sbjct: 1232 VYIAGSDRLGTQAALEYFKTLDELPDGPIMVEWTANGPVVVE 1273