Pairwise Alignments

Query, 717 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 688 a.a., hypothetical protein from Methanococcus maripaludis JJ

 Score =  949 bits (2453), Expect = 0.0
 Identities = 468/722 (64%), Positives = 569/722 (78%), Gaps = 39/722 (5%)

Query: 1   LNFFKKILVILMLLLVASISANFS-ESIDDGTYIYHNFTKADAEKIGVDENTTDYEKNET 59
           +NFFK  +   +LLL A IS N+S E +DDG Y+Y   T  +  + G+   +        
Sbjct: 1   MNFFK--ITTCLLLLFALISVNYSAEFVDDGQYVYCKLTNENLGEFGILNRS-------- 50

Query: 60  IQTFSDSDDDIYVMGCFLPTKEELMSMSEQITVVESVSETANLSNNTYLDLSKDPYFPLV 119
                                   +S ++ + +V   SE+ANL NNTYLDLS D YFP V
Sbjct: 51  ------------------------ISGTDNVYLVTGFSESANLPNNTYLDLSLDKYFPNV 86

Query: 120 GDQGKIGSCASWAIVYYANSYLQAKIHNYDLKGADSLKCFNPMWAYNKINDGKNE-GSGL 178
           G+QGKIGSC SWA  YYANSYLQA+I+N+DLKG DS KC NP+W YNK+N+G+   G+  
Sbjct: 87  GNQGKIGSCTSWACSYYANSYLQARINNWDLKGNDSSKCLNPLWTYNKMNNGEIYLGANS 146

Query: 179 IGNLNLISRLGSATYETMPPTNNYTIWGDYEAWLEAPQYRITGYEISSTNNTDVMKSWLN 238
              L ++SR+G+ TYETMP   +YT WGD + WLEAPQYRITG++ + T+NT+++KSWLN
Sbjct: 147 EDTLKMLSRIGAVTYETMPENESYTFWGDEDDWLEAPQYRITGFDFTLTSNTEIIKSWLN 206

Query: 239 EGSVIIIAMRGEDIWT-FDNNSILSDFDQSHDEADHAQAVIGYDDSISEDNETGAFKVMN 297
           EGS++IIA+  +D+   F+N SI+SD  QSH++A HA  + GY+DS+S+DNETG FKV+N
Sbjct: 207 EGSIVIIAIHYDDLRNCFENTSIISDHCQSHEDATHAVVIAGYNDSMSKDNETGVFKVVN 266

Query: 298 SWGANWSPNGDGSYYITYKAMANLDYTTCYRITGAVYNTSESHPELIGVVKFDSDNKGTK 357
           S G  W PNGDG YY+TY A++NL    C RI+ AVYNTS+SHPELIG V+FD +NKGTK
Sbjct: 267 SEGPLWGPNGDGCYYMTYDAVSNLKDCYCARISDAVYNTSDSHPELIGYVRFDPENKGTK 326

Query: 358 DQNITFGIGNKSNISGSVDIYEGM--DENGGNGSMPDFIAVDLTDWKSEFENSLNNTGKG 415
           DQNI FGIGN+SNISG VDI+  +  ++NGGNGSMPDFI +DLTDWKSEFENSLN TGKG
Sbjct: 327 DQNIIFGIGNESNISGYVDIFGSLYCNQNGGNGSMPDFIVIDLTDWKSEFENSLNTTGKG 386

Query: 416 YYFANFSNGTKTSIISEFGIIKYSSYPNGEEINTLNSYACNNSTLFKFYSKTAPKLTNSS 475
           YYF NFSNGT+TSIISEFGIIKYSSYP+ EEINTLNSYACN S +FKFYSKTAP++ NSS
Sbjct: 387 YYFVNFSNGTETSIISEFGIIKYSSYPDIEEINTLNSYACNKSVVFKFYSKTAPEIINSS 446

Query: 476 IDILDSKVIVSIHADDVDDDLWGVKVYFDGLNEYYSLTRADQTFNTSFNKSMFTYGEHYA 535
           +++L+++VIVSI A+DV++DLWGV VYFDG NEYYSL   ++TFN SF+KSMF+YGEHYA
Sbjct: 447 VNVLENEVIVSISAEDVENDLWGVNVYFDGSNEYYSLNGTNETFNGSFDKSMFSYGEHYA 506

Query: 536 IFEAFDGSGNTNKSEKVYFEILAPATTSRSTTSHYSSDLSDGIDSGTIKRAISNSNVIYG 595
           IFEAFDGSGN N SE V FEI APAT+SRST +HYSSDLSDGI SGTIKRA+SNSN+IYG
Sbjct: 507 IFEAFDGSGNVNNSEMVAFEISAPATSSRSTGNHYSSDLSDGISSGTIKRAVSNSNIIYG 566

Query: 596 SDIDEEFALNLRENVQNGNNYELSKDTIIVGGPESNGFADKYNNEFEIQITNDYPGENKG 655
           SD+DE +ALNLRENV+NGN+YELS DTIIVGGPE+NGFA+KY++EFEI ITNDYPGENKG
Sbjct: 567 SDVDEGYALNLRENVKNGNDYELSGDTIIVGGPEANGFAEKYDSEFEISITNDYPGENKG 626

Query: 656 VIQIQTIEVRDGNIIKPYQVIYIAGSDRFGTLAALEYFKTLDELPKGPITVEWNDNGIIV 715
           +IQ++ IEVRDGNIIK YQVIYIAGSDRFGT AALEYFKTLDELP  P+TVEW +NG +V
Sbjct: 627 LIQVKNIEVRDGNIIKTYQVIYIAGSDRFGTQAALEYFKTLDELPDMPLTVEWTENGPVV 686

Query: 716 VE 717
           VE
Sbjct: 687 VE 688