Pairwise Alignments

Query, 717 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 1050 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis JJ

 Score =  197 bits (500), Expect = 3e-54
 Identities = 148/473 (31%), Positives = 228/473 (48%), Gaps = 61/473 (12%)

Query: 299  WGANWSPNGDGSYYITYKAMANLDYTTCYRITGAVY-NTSESHPELIGV--------VKF 349
            WG N + + + +Y I Y    +  Y+       A Y N +     +IG         ++ 
Sbjct: 585  WGLNNTISNNTAYLILYWGYDSKIYSNAVDYALASYGNNNNISSNVIGSESTHGDNSIES 644

Query: 350  DSDNKGTKDQNITFGI---GNKSNISGSVDIYEGMDENGGNGSMPDFIAVDLTDWKSEFE 406
              DN      N+ + I   GN + IS ++ + + +   GG  ++   I  D    + ++ 
Sbjct: 645  YGDNNSISSNNVDYMIYLKGNYNTISSNI-VQDHISAGGGYNTISSNIVQDHIWTRGQYT 703

Query: 407  NSLNNTG-KGYYFANFSNGTKTSIISEFGIIKYSSYPNGEEINT-----LNSYA--CNNS 458
               +NT     Y+A   NG       ++GI  Y++  N   + +     L++Y    +N 
Sbjct: 704  LISSNTVINASYYAIDPNGDY-----DYGIDAYATVFNNTVLASKVGIWLDNYCEGYSNI 758

Query: 459  TLFKFYSKTAPKLTNSSIDILDSKVIVSIHADDVDDDLWGV------------------- 499
            T    Y+   P +   +I   +  +   IH  +   D+ G+                   
Sbjct: 759  TQNTVYADDYPIIIGDNITGCNIYLNNFIHTGN-STDISGIMPNTTVNNSLVSPFEIEYN 817

Query: 500  ---KVYFDGLNEYYSLTRADQTFNTSFNKSMF--------TYGEHYAIFEAFDGSGNTNK 548
                 Y + L  Y+S      T       + +        TYGE Y   +  +       
Sbjct: 818  YNGNTYSNILGNYWSDYSGTDTDGNGIGDTYYIYGCDYERTYGEDYYDIDYLENDTAPLI 877

Query: 549  SEKVYFEILAPATTSRSTTSH----YSSDLSDGIDSGTIKRAISNSNVIYGSDIDEEFAL 604
                  EI     TSRS+       Y SD+SD I+S  IK  +S+++VIYG++ID+++A 
Sbjct: 878  DMWNGNEIGNYVATSRSSGGSGGRSYDSDISDEIESKVIKNFVSSASVIYGNEIDQQYAE 937

Query: 605  NLRENVQNGNNYELSKDTIIVGGPESNGFADKYNNEFEIQITNDYPGENKGVIQIQTIEV 664
             LRE +QN N Y++S + +IVGGP SNGFA +YN++FE+ I+NDYPGENKG+IQ+  ++ 
Sbjct: 938  ELREKIQNANGYKISGNAVIVGGPLSNGFAREYNDQFEMPISNDYPGENKGIIQVLKVQD 997

Query: 665  RDGNIIKPYQVIYIAGSDRFGTLAALEYFKTLDELPKGPITVEWNDNGIIVVE 717
              G I++ Y ++YIAGSDR GT AALEYFKTLDELP+GPI VEW +NG  VVE
Sbjct: 998  NTGKIVQSYTIVYIAGSDRLGTQAALEYFKTLDELPEGPIMVEWTENGHKVVE 1050