Pairwise Alignments

Query, 300 a.a., permease from Methanococcus maripaludis S2

Subject, 490 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 75.1 bits (183), Expect = 3e-18
 Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 17/160 (10%)

Query: 153 SGFSEPTSRDNDP-NVLLRLLKNIWRN--------IKATGHYFLIGILLSALFQHYVSPD 203
           +G    T +D  P N    +++ IW          ++ T  + LIG+  +AL Q YV  D
Sbjct: 283 TGCCGSTEQDARPANQPASVIERIWDGLVYASTDLVRDTAIWLLIGLFFAALVQTYVPAD 342

Query: 204 AFANLFGSQRGFGVL---MAATIGVPLYVCGGGTLPLLMAWLDSGMSMGAAAAFMITGPA 260
                F +Q G G+L   +   + +P+Y+C   + P+    L +G+S GA   FM+ GPA
Sbjct: 343 -----FLAQWGNGILAMLVMVLVSIPMYICATASTPIAAGLLLAGVSPGAVLVFMMAGPA 397

Query: 261 TKITNLGAVKIVLGAKHFTAYVAFTIISAIIAGVVVNLMV 300
           T I  LG V   LG +    Y+   +  A++ GV+VN +V
Sbjct: 398 TNIATLGVVTKELGKRALFGYLGGVLGVALVFGVLVNYLV 437



 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 31/126 (24%), Positives = 57/126 (45%)

Query: 171 LLKNIWRNIKATGHYFLIGILLSALFQHYVSPDAFANLFGSQRGFGVLMAATIGVPLYVC 230
           LL N       +  + L+G+ L+ + + +V         G       + AA +G PL +C
Sbjct: 2   LLNNFLHLFLESAPWLLLGLFLAGMLKMFVPMAWMQKQLGGHGFKATVKAALLGAPLPLC 61

Query: 231 GGGTLPLLMAWLDSGMSMGAAAAFMITGPATKITNLGAVKIVLGAKHFTAYVAFTIISAI 290
             G +P  +    SG S  A  +F+++ P T + ++    ++LG           + SAI
Sbjct: 62  SCGVIPAAVGLRRSGASKAATTSFLVSTPETGVDSVTVSYVLLGPFMAIVRPIAAVTSAI 121

Query: 291 IAGVVV 296
           +AG++V
Sbjct: 122 VAGLLV 127



 Score = 42.0 bits (97), Expect = 3e-08
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 58  GVFGMIPAGLLGIASPICMYGTIPIAASFSKSGMRDDWLAAFMMSSILLNPQLIIYS-AA 116
           G    + A LLG   P+C  G IP A    +SG       +F++S+       +  S   
Sbjct: 44  GFKATVKAALLGAPLPLCSCGVIPAAVGLRRSGASKAATTSFLVSTPETGVDSVTVSYVL 103

Query: 117 LGETALAVRIISALACGVIAGLLV 140
           LG     VR I+A+   ++AGLLV
Sbjct: 104 LGPFMAIVRPIAAVTSAIVAGLLV 127



 Score = 38.9 bits (89), Expect = 2e-07
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 7/141 (4%)

Query: 4   ILHREFIYLWYYFTVQFNQIAIYWVFGIVFGSIISVFGKNKIHKLFASIQNRRLGVFGMI 63
           ++ R +  L Y  T      AI+ + G+ F +++  +        + +      G+  M+
Sbjct: 302 VIERIWDGLVYASTDLVRDTAIWLLIGLFFAALVQTYVPADFLAQWGN------GILAML 355

Query: 64  PAGLLGIASPICMYGTIPIAASFSKSGMRDDWLAAFMMSSILLN-PQLIIYSAALGETAL 122
              L+ I   IC   + PIAA    +G+    +  FMM+    N   L + +  LG+ AL
Sbjct: 356 VMVLVSIPMYICATASTPIAAGLLLAGVSPGAVLVFMMAGPATNIATLGVVTKELGKRAL 415

Query: 123 AVRIISALACGVIAGLLVKFL 143
              +   L   ++ G+LV +L
Sbjct: 416 FGYLGGVLGVALVFGVLVNYL 436