Pairwise Alignments

Query, 300 a.a., permease from Methanococcus maripaludis S2

Subject, 340 a.a., Predicted permeases from Phaeobacter inhibens DSM 17395

 Score = 80.5 bits (197), Expect = 5e-20
 Identities = 69/259 (26%), Positives = 113/259 (43%), Gaps = 33/259 (12%)

Query: 62  MIPAGLLGIASPICMYGTIPIAASFSKSGMRDDWLAAFMMSSILLNPQLIIYSAA-LGET 120
           +I A L+G  +P+C    +P+ A    +G+    + AF +SS + +P ++  +AA LG +
Sbjct: 85  VIAASLIGAITPVCGVTVLPLMAGLLAAGVPLAPIMAFWLSSPITDPAMLATTAATLGLS 144

Query: 121 ALAVRIISALACGVIAGLLVKFLFNDRKFFNFSGFSEPTSRDNDPNVLLRLLK------- 173
               + ++A   GV  G +          F    +S    RDN     L   +       
Sbjct: 145 FAIGKTLAAFGLGVFGGAITAL-------FAKVPWSINALRDNGLARQLSAARCGAAQSF 197

Query: 174 --NIWRNIK----------ATGHYFLIGILLSALFQHY-----VSPDAFANLFGSQRGFG 216
              +WR  +          AT    LI  L+ A    Y     ++P A A   G  + + 
Sbjct: 198 EAKVWRTEERRRSFATQFWATTRLILI-CLIPAFAAEYALNAVLTPGALAAYVGEDQWWA 256

Query: 217 VLMAATIGVPLYVCGGGTLPLLMAWLDSGMSMGAAAAFMITGPATKITNLGAVKIVLGAK 276
           +  A  +G P Y+ G   LPL    +++GMS GAA AF+I+G    I    A+  +L  K
Sbjct: 257 IPAAVFVGAPAYIDGYAALPLTRGLIENGMSEGAAMAFLISGGVVSIWGAMAIAPILKLK 316

Query: 277 HFTAYVAFTIISAIIAGVV 295
            F  Y+A  ++ ++ AG V
Sbjct: 317 PFLLYLALAVLGSLAAGYV 335



 Score = 38.1 bits (87), Expect = 3e-07
 Identities = 26/88 (29%), Positives = 40/88 (45%)

Query: 187 LIGILLSALFQHYVSPDAFANLFGSQRGFGVLMAATIGVPLYVCGGGTLPLLMAWLDSGM 246
           ++GILL+A      +    A+ F  +    V+ A+ IG    VCG   LPL+   L +G+
Sbjct: 55  ILGILLAAWIIASGADAHIASAFEGRTLRTVIAASLIGAITPVCGVTVLPLMAGLLAAGV 114

Query: 247 SMGAAAAFMITGPATKITNLGAVKIVLG 274
            +    AF ++ P T    L      LG
Sbjct: 115 PLAPIMAFWLSSPITDPAMLATTAATLG 142