Pairwise Alignments

Query, 300 a.a., permease from Methanococcus maripaludis S2

Subject, 338 a.a., permease (RefSeq) from Shewanella loihica PV-4

 Score = 60.1 bits (144), Expect = 7e-14
 Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 36/260 (13%)

Query: 69  GIASPICMYGTIPIAASFSKSGMRDDWLAAFMMSSILLNP-QLIIYSAALGETALAVRII 127
           G  +P C   +IP+   F+ +G+      AF+++S L+N   +++  + LG     +  +
Sbjct: 82  GAITPFCSCSSIPVFLGFTTAGIPVGITMAFLLTSPLINEVAILLLFSLLGAKITLLYAL 141

Query: 128 SALACGVIAGLLVKFLFNDRKF----------------FNFSGFSEPTSRDNDPNV---- 167
           + +  G++ G L+  L  +R                     S     T  ++ P +    
Sbjct: 142 TGITIGMLGGALLDLLHAERWLQPLAANAYRRGATQTQTTASASDTYTPDESTPGISWRQ 201

Query: 168 --------LLRLLKNIWRNIKATGHYFLIGILLSALFQHYVSPDAFANLFGSQRGFGVLM 219
                    L +   +W+       + +IG+ + A    +V         G  + + V +
Sbjct: 202 RHQFAKQETLTIFGRVWK-------WVIIGVGIGAALHGFVPAGYLEANLGDGQWWSVPI 254

Query: 220 AATIGVPLYVCGGGTLPLLMAWLDSGMSMGAAAAFMITGPATKITNLGAVKIVLGAKHFT 279
           A  +G+PLY    G +P+L + L  G+ +G   AF ++  A        +K V+  +   
Sbjct: 255 AVLMGIPLYANATGVIPVLESLLIQGVPLGTTLAFCMSTVAASFPEFVMLKQVMQWRLLA 314

Query: 280 AYVAFTIISAIIAGVVVNLM 299
              A  +++  + G V+NL+
Sbjct: 315 LLFALLLVAFTLMGWVLNLV 334



 Score = 38.1 bits (87), Expect = 3e-07
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 4/114 (3%)

Query: 186 FLIGILLSALFQHYVSPDAFANLFGSQRGFGVLMAATIGVPLYVCGGGTLPLLMAWLDSG 245
           +LIG L +AL    V       L G  +  G  + A  G     C   ++P+ + +  +G
Sbjct: 48  YLIGWLRAALNVERVRD----YLAGKPKLLGYGLGAGFGAITPFCSCSSIPVFLGFTTAG 103

Query: 246 MSMGAAAAFMITGPATKITNLGAVKIVLGAKHFTAYVAFTIISAIIAGVVVNLM 299
           + +G   AF++T P      +  +  +LGAK    Y    I   ++ G +++L+
Sbjct: 104 IPVGITMAFLLTSPLINEVAILLLFSLLGAKITLLYALTGITIGMLGGALLDLL 157