Pairwise Alignments

Query, 300 a.a., permease from Methanococcus maripaludis S2

Subject, 331 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 55.8 bits (133), Expect = 1e-12
 Identities = 50/252 (19%), Positives = 108/252 (42%), Gaps = 15/252 (5%)

Query: 61  GMIPAGLLGIASPICMYGTIPIAASFSKSGMRDDWLAAFMMSSILLNP-QLIIYSAALGE 119
           G +   + G  +P C   +IP+   F+ +G+      AF+++S L+N   +++  + LG 
Sbjct: 74  GYLLGSIFGAITPFCSCSSIPVFLGFTSAGIPLGITIAFLITSPLINEVAVLLLMSLLGW 133

Query: 120 TALAVRIISALACGVIAGLLVKFLFNDRKFFNFSGFSEPTSRD----NDPNVLLRLLKNI 175
               + +   +  G++ G+L+  +  +R   +F+  +    R     +  + + R+L   
Sbjct: 134 KFTLLYVAVGMTVGMLGGVLLDAMKAERWLQSFAAEALLRGRQMAASDVVSTVARVLSLS 193

Query: 176 WRNIKATGH----------YFLIGILLSALFQHYVSPDAFANLFGSQRGFGVLMAATIGV 225
            R+  A             + +IG+ L A    +V         G  + + V +A  IG+
Sbjct: 194 ERHQFAKAEAIEIFGRVWKWVIIGVGLGAALHGFVPEGWIEAHLGQGQWWSVPVAVLIGI 253

Query: 226 PLYVCGGGTLPLLMAWLDSGMSMGAAAAFMITGPATKITNLGAVKIVLGAKHFTAYVAFT 285
           PLY    G +P++ + L +G+ +G   AF ++  A        +K V+  +     +   
Sbjct: 254 PLYSNATGIIPVMESLLANGLPIGTTLAFCMSTVAASFPEFILLKQVMQWRLLALLLVVL 313

Query: 286 IISAIIAGVVVN 297
           + +  + G + N
Sbjct: 314 LTAFTLVGWMFN 325



 Score = 46.6 bits (109), Expect = 8e-10
 Identities = 24/92 (26%), Positives = 45/92 (48%)

Query: 208 LFGSQRGFGVLMAATIGVPLYVCGGGTLPLLMAWLDSGMSMGAAAAFMITGPATKITNLG 267
           L G  +G G L+ +  G     C   ++P+ + +  +G+ +G   AF+IT P      + 
Sbjct: 66  LAGKNKGVGYLLGSIFGAITPFCSCSSIPVFLGFTSAGIPLGITIAFLITSPLINEVAVL 125

Query: 268 AVKIVLGAKHFTAYVAFTIISAIIAGVVVNLM 299
            +  +LG K    YVA  +   ++ GV+++ M
Sbjct: 126 LLMSLLGWKFTLLYVAVGMTVGMLGGVLLDAM 157