Pairwise Alignments

Query, 300 a.a., permease from Methanococcus maripaludis S2

Subject, 358 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 71.6 bits (174), Expect = 2e-17
 Identities = 34/131 (25%), Positives = 64/131 (48%)

Query: 169 LRLLKNIWRNIKATGHYFLIGILLSALFQHYVSPDAFANLFGSQRGFGVLMAATIGVPLY 228
           LR+ +  W++ K    Y  +G+LL +    ++  +   N  G    + + +AA IG+PLY
Sbjct: 227 LRVWRTTWKDFKQVSPYLFVGVLLGSFIYGFIPTEFIVNYAGEATWYAIPLAAVIGIPLY 286

Query: 229 VCGGGTLPLLMAWLDSGMSMGAAAAFMITGPATKITNLGAVKIVLGAKHFTAYVAFTIIS 288
           +     +PL  A +  GM+MG+  A +I      IT +  +K +   +   A++   +  
Sbjct: 287 IRAEAVIPLSAALVQKGMAMGSVMALIIGSAGASITEVILLKSIFKNQMIAAFLGVILAM 346

Query: 289 AIIAGVVVNLM 299
           AI +G +  L+
Sbjct: 347 AIASGFLYGLV 357



 Score = 48.1 bits (113), Expect = 3e-10
 Identities = 28/108 (25%), Positives = 45/108 (41%)

Query: 186 FLIGILLSALFQHYVSPDAFANLFGSQRGFGVLMAATIGVPLYVCGGGTLPLLMAWLDSG 245
           FL+   L  + Q +V+P    ++  S+ G G L+AA +G     C   T+P L   L + 
Sbjct: 27  FLVISYLVGMLQEFVTPQKVQSILSSRNGKGYLIAALLGSITPFCSCSTIPFLKGLLRAR 86

Query: 246 MSMGAAAAFMITGPATKITNLGAVKIVLGAKHFTAYVAFTIISAIIAG 293
              G    F+   P      +G   +  G K    Y    +  ++IAG
Sbjct: 87  AGFGPMMVFLFASPLLNPIIIGLFVVTFGVKVAVFYFVMAMGVSVIAG 134



 Score = 39.7 bits (91), Expect = 1e-07
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 25  IYWVFGIVFGSIISVFGKNKIHKLFASIQNRRLGVFGMIPAGLLGIASPICMYGTIPIAA 84
           ++ V   + G +       K+  + +S   +     G + A LLG  +P C   TIP   
Sbjct: 26  LFLVISYLVGMLQEFVTPQKVQSILSSRNGK-----GYLIAALLGSITPFCSCSTIPFLK 80

Query: 85  SFSKSGMRDDWLAAFMMSSILLNPQLI-IYSAALGETALAVRIISALACGVIAGLLVKFL 143
              ++      +  F+ +S LLNP +I ++    G        + A+   VIAG  ++ L
Sbjct: 81  GLLRARAGFGPMMVFLFASPLLNPIIIGLFVVTFGVKVAVFYFVMAMGVSVIAGFTLEKL 140

Query: 144 FNDR 147
             +R
Sbjct: 141 GFER 144



 Score = 29.3 bits (64), Expect = 1e-04
 Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 6   HREFIYLWYYFTVQFNQIAIYWVFGIVFGSIISVFGKNKIHKLFASIQNRRLGVFGMIP- 64
           HR ++ +W      F Q++ Y   G++ GS I  F   +    +A         +  IP 
Sbjct: 224 HR-WLRVWRTTWKDFKQVSPYLFVGVLLGSFIYGFIPTEFIVNYAGE-----ATWYAIPL 277

Query: 65  AGLLGIASPICMYGTIPIAASFSKSGMRDDWLAAFMMSSILLN-PQLIIYSAALGETALA 123
           A ++GI   I     IP++A+  + GM    + A ++ S   +  ++I+  +      +A
Sbjct: 278 AAVIGIPLYIRAEAVIPLSAALVQKGMAMGSVMALIIGSAGASITEVILLKSIFKNQMIA 337

Query: 124 VRIISALACGVIAGLLVKFLF 144
             +   LA  + +G L   +F
Sbjct: 338 AFLGVILAMAIASGFLYGLVF 358