Pairwise Alignments

Query, 300 a.a., permease from Methanococcus maripaludis S2

Subject, 332 a.a., permease (RefSeq) from Shewanella sp. ANA-3

 Score = 65.1 bits (157), Expect = 2e-15
 Identities = 56/261 (21%), Positives = 115/261 (44%), Gaps = 19/261 (7%)

Query: 53  QNRRLGVFGMIPAGLLGIASPICMYGTIPIAASFSKSGMRDDWLAAFMMSSILLNP-QLI 111
           +NR +G F  + +G  G  +P C   +IP+   F+ +G+      AF+++S L+N   ++
Sbjct: 69  KNRFIGYF--MGSGF-GAVTPFCSCSSIPVFLGFTSAGIPVGITMAFLITSPLINEVAVL 125

Query: 112 IYSAALGETALAVRIISALACGVIAGLLVKFLFNDRKFFNFSGFS-----EPTSRDNDPN 166
           +  + LG     + ++  ++ G++AG  +  +  +R   +F+  +        S+DN  +
Sbjct: 126 LLVSLLGWKFTVIYVLVGMSVGILAGAFLDTIRAERWLQSFAAKALEQGQAQASQDNSED 185

Query: 167 VLLRLLKNIWRNIKATGH----------YFLIGILLSALFQHYVSPDAFANLFGSQRGFG 216
           +    +    R+  A G           + +IG+ L A    +V         G  + + 
Sbjct: 186 MTSTSMTFTERHEFAKGETLEIFGRVWKWVIIGVGLGAALHGFVPDGWIEAHLGDGQWWS 245

Query: 217 VLMAATIGVPLYVCGGGTLPLLMAWLDSGMSMGAAAAFMITGPATKITNLGAVKIVLGAK 276
           V  A  IG+PLY    G +P++ + + +G+ +G   AF +   A        +K V+  +
Sbjct: 246 VPAAVLIGIPLYSNATGVIPIMESLITNGLPIGTTLAFCMATVAASFPEFILLKQVMQWR 305

Query: 277 HFTAYVAFTIISAIIAGVVVN 297
                 A  +I+  + G + N
Sbjct: 306 LLAIVFAILLIAFTLIGWIFN 326



 Score = 40.4 bits (93), Expect = 6e-08
 Identities = 23/90 (25%), Positives = 40/90 (44%)

Query: 208 LFGSQRGFGVLMAATIGVPLYVCGGGTLPLLMAWLDSGMSMGAAAAFMITGPATKITNLG 267
           L G  R  G  M +  G     C   ++P+ + +  +G+ +G   AF+IT P      + 
Sbjct: 66  LAGKNRFIGYFMGSGFGAVTPFCSCSSIPVFLGFTSAGIPVGITMAFLITSPLINEVAVL 125

Query: 268 AVKIVLGAKHFTAYVAFTIISAIIAGVVVN 297
            +  +LG K    YV   +   I+AG  ++
Sbjct: 126 LLVSLLGWKFTVIYVLVGMSVGILAGAFLD 155