Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 541 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  122 bits (305), Expect = 6e-32
 Identities = 103/386 (26%), Positives = 176/386 (45%), Gaps = 30/386 (7%)

Query: 343 TTVKTGDELQELSDSFNKM-AENVKNLMKTM-----DMDKLELANLLNNVSDVMNRVAKG 396
           T +K G +L  + +  NK+ A NV    ++        D      ++ ++S  +  V   
Sbjct: 150 TRIKEGTDL--MGEQLNKLIAINVAGASESSAKAGEHYDSAITGIIIVSISAALATVVLA 207

Query: 397 DFTARADESRENNKLEKAINTAVSNVADLIKELREELDLLNIQIQKVEDELKGAEETATQ 456
               R+  +  N  LE A   A  N+  +I +  +  D     +Q +        +T  Q
Sbjct: 208 LLLTRSIVAPLNRALEAARTIASGNLVQVIAD--DGKDEPGRLLQALATMQVSLRQTIEQ 265

Query: 457 VAEAATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEETVKSSEEIKENS------ 510
           +A +ATQ+  AA + SA  QESS  L+  +   ++  +A  E   + EE+  N+      
Sbjct: 266 IAGSATQLGAAAQELSAVTQESSRGLQQQHNEIEQAATAVNEMTAAVEEVARNAVSTSEA 325

Query: 511 --------EIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQT 562
                   + G  +V   +  +Q++T+ +      I+ L   G+ I +V  +I+ IAEQT
Sbjct: 326 SNQSTQAAQEGRTRVVETVDAIQTMTHDVQATASMIEGLAVQGRDIGKVLDVIRAIAEQT 385

Query: 563 GLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIEDTVDLG 622
            LLALNA+IEAARAG+AG+GFAVVA E++ALA    +S ++I   + G+ +     V   
Sbjct: 386 NLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTAQSTQEIEKMVAGIQNGTGQAVQSM 445

Query: 623 LKGKDEVDKGVIAIDEVNDALLKIKES---VNESAIKINGIKHGAQNASENTEGALKNAQ 679
            +        +        AL +I +S   +NE  + I          S   +  L N +
Sbjct: 446 QQSNQRTQSTLEMARAAGVALEQITQSIHQINERNLVIASASEEQAQVSREVDRNLVNIR 505

Query: 680 DIAALSEEFTATAEEVTASTEELNSI 705
           D+A  S    + A++ + +T EL+ +
Sbjct: 506 DLATQS---ASGAKQTSDATHELSRL 528



 Score = 32.3 bits (72), Expect = 6e-05
 Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 42/257 (16%)

Query: 489 AKEVYSAAEETVKSSEEIKENSEIGVEKVENAISRMQSIT--NVIDELGKSIKMLGEDGK 546
           A   Y+A   T + +E  K  S   +EK   A   M  ++  N  DEL   I        
Sbjct: 98  ANSSYAALPSTPQEAELYKVFSAT-LEKYLQAQKEMLDLSRQNKADELRTHINT------ 150

Query: 547 KINEVTGLIKDIAEQTGLLALN---ASIEAARAG---DAGKGFAVVASEIKALAEEI--- 597
           +I E T L+ +  +   L+A+N   AS  +A+AG   D+     ++ S   ALA  +   
Sbjct: 151 RIKEGTDLMGE--QLNKLIAINVAGASESSAKAGEHYDSAITGIIIVSISAALATVVLAL 208

Query: 598 ---KKSVEDINHTIDGVNSRIEDTVD--LGLKGKDEVDKGVIAIDEVNDALLKIKESVNE 652
              +  V  +N  ++   +     +   +   GKDE  + + A+  +  +L +  E +  
Sbjct: 209 LLTRSIVAPLNRALEAARTIASGNLVQVIADDGKDEPGRLLQALATMQVSLRQTIEQIAG 268

Query: 653 SAIKINGIKHGAQNASENTEGALKNAQDIAALSEEFTATAEEVTASTEELNSIIEEIRVI 712
           SA ++                    AQ+++A+++E +   ++     E+  + + E+   
Sbjct: 269 SATQLGAA-----------------AQELSAVTQESSRGLQQQHNEIEQAATAVNEMTAA 311

Query: 713 AEELTHVSERVSEKSNQ 729
            EE+   +   SE SNQ
Sbjct: 312 VEEVARNAVSTSEASNQ 328



 Score = 29.3 bits (64), Expect = 5e-04
 Identities = 31/167 (18%), Positives = 67/167 (40%), Gaps = 18/167 (10%)

Query: 567 LNASIEAARAGDAGKGFAVVASEIK----ALAEEIKKSVEDINHTIDGVNSRIEDTVDLG 622
           LN ++EAAR   +G    V+A + K     L + +      +  TI+ +           
Sbjct: 218 LNRALEAARTIASGNLVQVIADDGKDEPGRLLQALATMQVSLRQTIEQIAGSATQLGAAA 277

Query: 623 LKGKDEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQD-- 680
            +      +    + + ++ + +   +VNE    +  +   A + SE +  + + AQ+  
Sbjct: 278 QELSAVTQESSRGLQQQHNEIEQAATAVNEMTAAVEEVARNAVSTSEASNQSTQAAQEGR 337

Query: 681 ---------IAALSEEFTATA---EEVTASTEELNSIIEEIRVIAEE 715
                    I  ++ +  ATA   E +     ++  +++ IR IAE+
Sbjct: 338 TRVVETVDAIQTMTHDVQATASMIEGLAVQGRDIGKVLDVIRAIAEQ 384