Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 536 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  121 bits (304), Expect = 8e-32
 Identities = 91/341 (26%), Positives = 164/341 (48%), Gaps = 44/341 (12%)

Query: 385 NVSDVMNRVAKGDFTA--RADESRENNKLEKAINTAVSNVADLIKELREELDLLNIQIQK 442
           N  D    +AKG+ T     D S E  +L +A++T                       +K
Sbjct: 215 NALDAAEEIAKGNLTRPITVDGSDEAGRLLRAMSTMQ---------------------EK 253

Query: 443 VEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEETVKS 502
           + D L+    +ATQ+A AA ++     + +  L + + E+E       E+ SA EE  ++
Sbjct: 254 LRDTLQRISGSATQLASAAEELNSVTDESARGLTQQNNEIEQAATAVNEMTSAVEEVARN 313

Query: 503 SEEIKENSEI-------GVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLI 555
           +    E S+        G + V+  +S ++ ++  +      I  L ++ + I +V  +I
Sbjct: 314 AVSTSEASKNATTSAGDGRDLVQETVSAIERMSADVQSTAALIGNLADESRDIGKVLDVI 373

Query: 556 KDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRI 615
           + +A+QT LLALNA+IEAARAG+AG+GFAVVA E++ALA   ++S  +I   I  + S  
Sbjct: 374 RGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMIGSIQSGT 433

Query: 616 EDTVDLGLKGKDEVDKGV-------IAIDEVNDALLKIKESVNESAIKINGIKHGAQNAS 668
           E  VD      +  +  +       +++D +N A+++I E    + +  +  +  AQ A 
Sbjct: 434 EHAVDSMRNSTERAESTLNIARGAGMSLDTINTAIVEINE---RNLVIASAAEEQAQVAR 490

Query: 669 ENTEGALKNAQDIAALSEEFTATAEEVTASTEELNSIIEEI 709
           E      +N  +I  LS +    A + +A++ EL+ +  ++
Sbjct: 491 E----VDRNLVNIRDLSVQSATGANQTSAASAELSRLAVDL 527



 Score = 75.1 bits (183), Expect = 9e-18
 Identities = 81/405 (20%), Positives = 158/405 (39%), Gaps = 42/405 (10%)

Query: 243 MSQNAVYKGTANVLGTELITAYAPLLDANDDVIGMVFVGAPQTDAIAAK--NDARNKIIM 300
           +S+N        +L TEL++    +  A D ++ +  + A   +  AA+  + A N ++ 
Sbjct: 130 LSRNNQVDELRALLNTELLSNSDAINAAIDRLVEINNLQAEALNKGAAQQYSSAFNWVVT 189

Query: 301 LALFGILIAFLITSYSNRKITKPIEELKKGTEEFGNGNYDYKTTVKTGDELQELSDSFNK 360
           L L    +  L        ITKPI       EE   GN     TV   DE   L  + + 
Sbjct: 190 LLLIATGLTLLFAWLLTNSITKPIANALDAAEEIAKGNLTRPITVDGSDEAGRLLRAMST 249

Query: 361 MAENVKNLMKTMDMDKLELANLLNNVSDVMNRVAKG----------------DFTARADE 404
           M E +++ ++ +     +LA+    ++ V +  A+G                + T+  +E
Sbjct: 250 MQEKLRDTLQRISGSATQLASAAEELNSVTDESARGLTQQNNEIEQAATAVNEMTSAVEE 309

Query: 405 SREN----NKLEKAINTAVSNVADLIKELREELDLLNIQIQ-----------------KV 443
              N    ++  K   T+  +  DL++E    ++ ++  +Q                 KV
Sbjct: 310 VARNAVSTSEASKNATTSAGDGRDLVQETVSAIERMSADVQSTAALIGNLADESRDIGKV 369

Query: 444 EDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEETVKSS 503
            D ++G  +    +A  A   A  A +        ++E+ +     ++  S  E  + S 
Sbjct: 370 LDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMIGS- 428

Query: 504 EEIKENSEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTG 563
             I+  +E  V+ + N+  R +S  N+    G S+  +     +INE   +I   AE+  
Sbjct: 429 --IQSGTEHAVDSMRNSTERAESTLNIARGAGMSLDTINTAIVEINERNLVIASAAEEQA 486

Query: 564 LLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTI 608
            +A           D     A  A++  A + E+ +   D+N+ +
Sbjct: 487 QVAREVDRNLVNIRDLSVQSATGANQTSAASAELSRLAVDLNNMV 531



 Score = 26.2 bits (56), Expect = 0.005
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 677 NAQDIAALSEEFTATAEEVTASTEELNSIIEEIRVIAEELTHVSERVSEKS 727
           +A  +A+ +EE  +  +E      + N+ IE+      E+T   E V+  +
Sbjct: 264 SATQLASAAEELNSVTDESARGLTQQNNEIEQAATAVNEMTSAVEEVARNA 314