Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 676 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  131 bits (330), Expect = 1e-34
 Identities = 101/327 (30%), Positives = 167/327 (51%), Gaps = 45/327 (13%)

Query: 383 LNNVSDVMNRVAKGDFTARAD-ESREN-NKLEKAINTAVSNVADLIKELREELDLLNIQI 440
           L ++  +M++VA GD TAR   +SR+   +L +  NT V+ V +LI+ + + +  ++ Q 
Sbjct: 353 LRSLGKIMDKVAAGDMTARYQVQSRDELGELGQVFNTTVAQVRELIERVGQTVAEVDRQA 412

Query: 441 QKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEETV 500
           Q+VE     + +T ++      QVA A ++ SA               A+EV S+AE  V
Sbjct: 413 QRVESVSGESNQTVSEQRGQIEQVATAMNEMSA--------------TAQEVASSAEAAV 458

Query: 501 KSSEEIKENSEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAE 560
            S++ + E +  G   V   +  +Q + + I++  + I  L  D K I++V  +IK IAE
Sbjct: 459 GSAQSVNEETVSGRALVVAQVGGIQRLASEIEQSVQVINQLAGDSKAISQVLDVIKTIAE 518

Query: 561 QTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIEDTVD 620
           QT LLALNA+IEAARAG+ G+GFAVVA E++ LA+  +KS  +I   I    +R+++ V 
Sbjct: 519 QTNLLALNAAIEAARAGEQGRGFAVVADEVRGLAQRTQKSTAEIEQMI----ARLQNGVG 574

Query: 621 LGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGA----LK 676
             +K                   +    ++ E  +  +G     + A EN  GA    + 
Sbjct: 575 AAVK------------------TMHASHALAEDTVGQSG---QVEQALENILGAVGLIVD 613

Query: 677 NAQDIAALSEEFTATAEEVTASTEELN 703
             Q IAA +E+ TA A ++  +   +N
Sbjct: 614 QNQQIAAAAEQQTAVAHDIDRNIVAIN 640



 Score = 42.4 bits (98), Expect = 8e-08
 Identities = 55/264 (20%), Positives = 104/264 (39%), Gaps = 37/264 (14%)

Query: 496 AEETVKSSEEIKENSEI---GVEKVENAISRMQSITNVIDELGKSIKML-GEDGKKINEV 551
           A   V+S +E+ E  ++    V +V   I R+      +D   + ++ + GE  + ++E 
Sbjct: 370 ARYQVQSRDELGELGQVFNTTVAQVRELIERVGQTVAEVDRQAQRVESVSGESNQTVSEQ 429

Query: 552 TGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASE---------------IKALAEE 596
            G I+ +A     ++  A  E A + +A  G A   +E               I+ LA E
Sbjct: 430 RGQIEQVATAMNEMSATAQ-EVASSAEAAVGSAQSVNEETVSGRALVVAQVGGIQRLASE 488

Query: 597 IKKSVEDINH----------TIDGVNSRIEDTVDLGLKGKDEVDKG-------VIAIDEV 639
           I++SV+ IN            +D + +  E T  L L    E  +         +  DEV
Sbjct: 489 IEQSVQVINQLAGDSKAISQVLDVIKTIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 548

Query: 640 NDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQDIAALSEEFTATAEEVTAST 699
                + ++S  E    I  +++G   A +    +   A+D    S +     E +  + 
Sbjct: 549 RGLAQRTQKSTAEIEQMIARLQNGVGAAVKTMHASHALAEDTVGQSGQVEQALENILGAV 608

Query: 700 EELNSIIEEIRVIAEELTHVSERV 723
             +    ++I   AE+ T V+  +
Sbjct: 609 GLIVDQNQQIAAAAEQQTAVAHDI 632