Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 489 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  123 bits (309), Expect = 2e-32
 Identities = 98/350 (28%), Positives = 166/350 (47%), Gaps = 38/350 (10%)

Query: 379 LANLLNNVSDVMNRVAK-GDFTARAD-ESREN--------NKLEKAINTAVSNVADLIKE 428
           L + LN + DVM  V + GD  AR   +SR+         N ++      VS VA     
Sbjct: 161 LLSHLNTLKDVMLHVERSGDLQARVPLDSRDEVGQMASAFNAMQGGYQRVVSTVAQAAAR 220

Query: 429 LREELDLLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELESTYEN 488
           L E    L   +  V   ++G +    Q A A              + E S  +    E+
Sbjct: 221 LDEGASRLATSMNDVHKGMRGQQGETDQAATA--------------INEMSATVHQIAEH 266

Query: 489 AKEVYSAAEETVKSSEEIKENSEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKI 548
           A+E    ++    +++ +  +    V +VE +IS   S++  + + G+ I+ L  D ++I
Sbjct: 267 ARETRDQSQ----NADRLAGDGHRVVGRVEKSIS---SLSQGVQQTGEMIEQLAADSQRI 319

Query: 549 NEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTI 608
           N V  +I  IAEQT LLALNA+IEAARAG+ G+GFAVVA E++ LA+ ++ S ++I   I
Sbjct: 320 NGVVNVIHSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAKRVQDSTDEITQMI 379

Query: 609 DGVNSRIEDTVDL----GLKGKD---EVDKGVIAIDEVNDALLKIKESVNESAIKINGIK 661
            G+ S   D V+      LK  D   E      A++ + DA+ +++ES  + A+      
Sbjct: 380 SGLQSMTRDAVEFMQESSLKADDCVREAHDAAQALEAIADAVAQMRESNTQIAVAAEQQS 439

Query: 662 HGAQNASENTEGALKNAQDIAALSEEFTATAEEVTASTEELNSIIEEIRV 711
             A+  + +  G     +     +    +T+ E+ A + +L+  I ++R+
Sbjct: 440 QVAEELNRSVTGIRDVTERTVEQTVSSASTSAELAALSADLSRAIGQLRL 489



 Score = 53.5 bits (127), Expect = 2e-11
 Identities = 71/342 (20%), Positives = 141/342 (41%), Gaps = 49/342 (14%)

Query: 300 MLALFGILIAFLITSYSNRK-ITKPIEELKKGTEEFGNGNYDYKTTVKTGDELQELSDSF 358
           +LA   +LI FL++  +  K +   +E          +G+   +  + + DE+ +++ +F
Sbjct: 150 LLAASQLLIRFLLSHLNTLKDVMLHVER---------SGDLQARVPLDSRDEVGQMASAF 200

Query: 359 NKMAENVKNLMKTMDMDKLELANLLNNVSDVMNRVAKGDFTARADESRENNKLEKAINTA 418
           N M    + ++ T+      L    + ++  MN V KG       +  E ++   AIN  
Sbjct: 201 NAMQGGYQRVVSTVAQAAARLDEGASRLATSMNDVHKG----MRGQQGETDQAATAINEM 256

Query: 419 VSNVADLIKELREELDLLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQES 478
            + V  + +  RE             D+ + A+  A        +V ++ S  S  +Q++
Sbjct: 257 SATVHQIAEHARE-----------TRDQSQNADRLAGDGHRVVGRVEKSISSLSQGVQQT 305

Query: 479 SEELESTYENAKE-------VYSAAEET----VKSSEEIKENSEIG------VEKVENAI 521
            E +E    +++        ++S AE+T    + ++ E     E G       ++V N  
Sbjct: 306 GEMIEQLAADSQRINGVVNVIHSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLA 365

Query: 522 SRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIA---EQTGLLALNASIEA-ARAG 577
            R+Q  T+ I ++   ++ +  D  +  + + L  D           AL A  +A A+  
Sbjct: 366 KRVQDSTDEITQMISGLQSMTRDAVEFMQESSLKADDCVREAHDAAQALEAIADAVAQMR 425

Query: 578 DAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIEDTV 619
           ++    AV A +   +AEE+ +SV  I    D     +E TV
Sbjct: 426 ESNTQIAVAAEQQSQVAEELNRSVTGIR---DVTERTVEQTV 464



 Score = 43.5 bits (101), Expect = 3e-08
 Identities = 39/194 (20%), Positives = 82/194 (42%), Gaps = 17/194 (8%)

Query: 548 INEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVE----- 602
           INE++  +  IAE        +      AGD  +    V   I +L++ ++++ E     
Sbjct: 253 INEMSATVHQIAEHARETRDQSQNADRLAGDGHRVVGRVEKSISSLSQGVQQTGEMIEQL 312

Query: 603 -----DINHTIDGVNSRIEDTVDLGLKGKDEVDKG-------VIAIDEVNDALLKIKESV 650
                 IN  ++ ++S  E T  L L    E  +         +  DEV +   ++++S 
Sbjct: 313 AADSQRINGVVNVIHSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAKRVQDST 372

Query: 651 NESAIKINGIKHGAQNASENTEGALKNAQDIAALSEEFTATAEEVTASTEELNSIIEEIR 710
           +E    I+G++   ++A E  + +   A D    + +     E +  +  ++     +I 
Sbjct: 373 DEITQMISGLQSMTRDAVEFMQESSLKADDCVREAHDAAQALEAIADAVAQMRESNTQIA 432

Query: 711 VIAEELTHVSERVS 724
           V AE+ + V+E ++
Sbjct: 433 VAAEQQSQVAEELN 446