Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 561 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  128 bits (322), Expect = 7e-34
 Identities = 88/334 (26%), Positives = 172/334 (51%), Gaps = 28/334 (8%)

Query: 383 LNNVSDVMNRVAKGDFTARADESRENN--KLEKAINTAVSNVADLIKELREELDLLNIQI 440
           +N++  VM ++A+GD + +AD   EN   KL + +NT V+ +   +++L           
Sbjct: 238 INSLQSVMRKLAQGDLSVKADADGENEIAKLSQDVNTTVTQLYTTVEQLT---------- 287

Query: 441 QKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSE------ELESTYENAKEVYS 494
                  + +EE A+   E A  + +A S+   +L E  +      EL ST +N  +  S
Sbjct: 288 -------RISEEVASASTELAAVMTQAESNAQMELMEIEQVASAVNELASTADNVSDNAS 340

Query: 495 AAEETVKSSEEIKENSEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGL 554
           +A+ T + ++E+ + S + + K  +  S   ++   +++  + +  L E  ++I+ V  +
Sbjct: 341 SADATAREADELAK-SGLAIFKESSQASEQMALA--LNDAARVVLRLKEQSEQISNVIEV 397

Query: 555 IKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSR 614
           I+ +++QT LLALNA+IEAARAG++G+GFAVVA E++ LA   + S ++I   I+ + ++
Sbjct: 398 IRGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQASTKEIQAIIEELQTQ 457

Query: 615 IEDTVDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGA 674
                D      D + +      + NDAL+ I ESV++       +   A+  S  T+  
Sbjct: 458 STMANDSMQTSLDMLTQNKALTAKANDALIGITESVSDINDSNAQVATAAEQQSHVTQDI 517

Query: 675 LKNAQDIAALSEEFTATAEEVTASTEELNSIIEE 708
            +N  +++ L  +      +  +++ EL+ + E+
Sbjct: 518 NRNVSNMSTLVHQNVTGISQSASASNELSHLAEK 551



 Score = 43.1 bits (100), Expect = 4e-08
 Identities = 73/357 (20%), Positives = 144/357 (40%), Gaps = 73/357 (20%)

Query: 424 DLIKELREELDLLNIQIQKVEDELKGAEETATQVAEAATQVAEAAS--------DQS-AK 474
           + I ELRE L  +   +  +E + + + +           VAE+          DQ  A 
Sbjct: 102 NFIAELREGLTEVQSALSSIEQDAQFSRDVPVVKQSIEIYVAESQKMVALFNRLDQGLAT 161

Query: 475 LQESSEELESTYENAKEVYSAA---------------EETVKSSEEIKENSEIGVEKV-- 517
            +E++  ++S  E    + SA                E++ +S+  +  N+ I V  V  
Sbjct: 162 REEANVFIQSFRETGNRMISAINDLSQKVNHYATTSMEQSAQSNAVVMRNAMITVLSVLM 221

Query: 518 ----------ENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLAL 567
                        ++ + S+ +V+ +L +    +  D    NE+  L +D+   T +  L
Sbjct: 222 LSVLAAWLLSGQIVAPINSLQSVMRKLAQGDLSVKADADGENEIAKLSQDV--NTTVTQL 279

Query: 568 NASIE-----AARAGDAGKGFAVVASEIKALA-------EEIKKSVEDINHTIDGVNSRI 615
             ++E     +     A    A V ++ ++ A       E++  +V ++  T D V+   
Sbjct: 280 YTTVEQLTRISEEVASASTELAAVMTQAESNAQMELMEIEQVASAVNELASTADNVSDNA 339

Query: 616 EDTVDLGLKGKDEVDKGVIAIDE------------VNDA---LLKIKESVNESAIKINGI 660
             + D   +  DE+ K  +AI +            +NDA   +L++KE   + +  I  I
Sbjct: 340 S-SADATAREADELAKSGLAIFKESSQASEQMALALNDAARVVLRLKEQSEQISNVIEVI 398

Query: 661 KHG-------AQNASENTEGALKNAQDIAALSEEFTATAEEVTASTEELNSIIEEIR 710
           +         A NA+     A ++ +  A +++E    A    AST+E+ +IIEE++
Sbjct: 399 RGVSDQTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQASTKEIQAIIEELQ 455



 Score = 26.9 bits (58), Expect = 0.003
 Identities = 9/36 (25%), Positives = 22/36 (61%)

Query: 694 EVTASTEELNSIIEEIRVIAEELTHVSERVSEKSNQ 729
           E+   ++++N+ + ++    E+LT +SE V+  S +
Sbjct: 264 EIAKLSQDVNTTVTQLYTTVEQLTRISEEVASASTE 299