Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 578 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  116 bits (291), Expect = 3e-30
 Identities = 108/428 (25%), Positives = 180/428 (42%), Gaps = 74/428 (17%)

Query: 280 VGAPQTDAIAAKNDARNKIIMLALFGILIAFLITSYSNRKIT-KPIEELKKGTEEF--GN 336
           +G     AI A  D  N  I LAL       ++ S +   ++ KP+  L         GN
Sbjct: 207 IGYIDLTAIQANTDQLNWKITLALLVCASVIIVASVTMLHVSFKPLSRLNTLVANLSQGN 266

Query: 337 GNYDYKTTVKTGDELQELSDSFNKMAENVKNLMKTMDMDKLELANLLNNVSDVMNRVAKG 396
           G+   +  V++ DE+ ++ +S N   E ++ +                            
Sbjct: 267 GDLTQRLAVESKDEIGQICNSINLFIEKLQQM---------------------------- 298

Query: 397 DFTARADESRENNKLEKAINTAVSNVADLIKELREELDLLNIQIQKVEDELKGAEETATQ 456
            F   AD S+E ++           V  L  + R  L+ LN   Q+ E  +   EE    
Sbjct: 299 -FIDVADSSKEIDRA----------VVHLSNQARSNLNTLNQHTQETEQAITAIEE---- 343

Query: 457 VAEAATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEETVKSSEEIKENSEIGVEK 516
           ++ +A  +A++A D +                        E T + ++E K+        
Sbjct: 344 MSASAGSIAQSADDAAL---------------------LTERTNRYADESKQT------- 375

Query: 517 VENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARA 576
           V  A++ +  + N +  + ++I  + ED K+IN V  +I  IAEQT LLALNA+IEAARA
Sbjct: 376 VTEAVNSVNGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQTNLLALNAAIEAARA 435

Query: 577 GDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIEDTVDLGLKGKDEVDKGVIAI 636
           G+ G+GFAVVA E++ALA   ++S   IN  +  + +  E+ V      +   ++     
Sbjct: 436 GEQGRGFAVVADEVRALASRTQQSTSQINDMLATLKTTTENVVKEMDSTRIHCEETAERT 495

Query: 637 DEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQDIAALSEEFTATAEEVT 696
           + V D+L  + +SV E       I   A    + T    KN   I  +  +    A +VT
Sbjct: 496 NHVMDSLNVVTDSVAEMNNLNTLIATSAMEQRQVTHEVSKNMAAIQEMVRKLNMNAAQVT 555

Query: 697 ASTEELNS 704
           + + EL +
Sbjct: 556 SVSNELQN 563



 Score = 46.6 bits (109), Expect = 4e-09
 Identities = 28/180 (15%), Positives = 84/180 (46%), Gaps = 1/180 (0%)

Query: 537 SIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAA-RAGDAGKGFAVVASEIKALAE 595
           S+ ML    K ++ +  L+ ++++  G L    ++E+    G       +   +++ +  
Sbjct: 241 SVTMLHVSFKPLSRLNTLVANLSQGNGDLTQRLAVESKDEIGQICNSINLFIEKLQQMFI 300

Query: 596 EIKKSVEDINHTIDGVNSRIEDTVDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAI 655
           ++  S ++I+  +  ++++    ++   +   E ++ + AI+E++ +   I +S +++A+
Sbjct: 301 DVADSSKEIDRAVVHLSNQARSNLNTLNQHTQETEQAITAIEEMSASAGSIAQSADDAAL 360

Query: 656 KINGIKHGAQNASENTEGALKNAQDIAALSEEFTATAEEVTASTEELNSIIEEIRVIAEE 715
                   A  + +    A+ +   +         T   ++  T+++NS+++ I  IAE+
Sbjct: 361 LTERTNRYADESKQTVTEAVNSVNGLVNQVSSMAETITRMSEDTKQINSVLQVIGAIAEQ 420