Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 681 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  121 bits (303), Expect = 1e-31
 Identities = 88/331 (26%), Positives = 153/331 (46%), Gaps = 34/331 (10%)

Query: 383 LNNVSDVMNRVAKGDFTARADESRENNKLEKAINTAVSNVADLIKELREELDLLNIQIQK 442
           LN+      R+A GD T  +  +R+                       +EL LL   +Q 
Sbjct: 358 LNSTVIAARRIADGDLTHDSSTTRQ-----------------------DELGLLQNTMQH 394

Query: 443 VEDELKGA----EETATQVAEAATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEE 498
           +   L+G         TQ+A AA Q++  +   SA +     E++       E+ S  +E
Sbjct: 395 MTVSLRGLIGGIGNGVTQIATAAEQLSAVSEQTSAGVTLQKNEVDQVATAMNEMASTVQE 454

Query: 499 TVKSSEEIKENSEIGVEK-------VENAISRMQSITNVIDELGKSIKMLGEDGKKINEV 551
             +++E+  + ++   E+       V++A   +  +   + +LG++++ L ED  KI  V
Sbjct: 455 VARNTEDASQAAKQASERAAHGSSVVQHATREIGQLAGEVQQLGEAMQRLTEDSGKIGSV 514

Query: 552 TGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGV 611
             +IK +AEQT LLALNA+IEAARAG+ G+GFAVVA E+++LA+  + S  +I   I  +
Sbjct: 515 IDVIKAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQNSTTEIEALIQAL 574

Query: 612 NSRIEDTVDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENT 671
                    L        +  V+   +   AL++I +S+         I   A+  S  T
Sbjct: 575 QKGTGAASGLMDASLQRTEGTVVLARQAEQALVEINQSIGTIEQMSQQISAAAEQQSAVT 634

Query: 672 EGALKNAQDIAALSEEFTATAEEVTASTEEL 702
           E   ++   +  ++++  +  E+  AST EL
Sbjct: 635 EEINRSVLSVRDIADQSASATEQSAASTVEL 665



 Score = 32.7 bits (73), Expect = 6e-05
 Identities = 16/90 (17%), Positives = 44/90 (48%)

Query: 626 KDEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQDIAALS 685
           K+EVD+   A++E+   + ++  +  +++         A + S   + A +    +A   
Sbjct: 435 KNEVDQVATAMNEMASTVQEVARNTEDASQAAKQASERAAHGSSVVQHATREIGQLAGEV 494

Query: 686 EEFTATAEEVTASTEELNSIIEEIRVIAEE 715
           ++     + +T  + ++ S+I+ I+ +AE+
Sbjct: 495 QQLGEAMQRLTEDSGKIGSVIDVIKAVAEQ 524