Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 658 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  140 bits (354), Expect = 2e-37
 Identities = 140/573 (24%), Positives = 244/573 (42%), Gaps = 30/573 (5%)

Query: 165 SALGMVVTYPIYENGNVVGSIIIIDI-LNNNNEIVDQVKADTGDEATFSLGKQ----RIS 219
           + L +    P+   G     + + D  LNN+   VD+ ++ T   AT  +       RIS
Sbjct: 82  AGLSLQADKPVTVAGTSTPGLFLRDAALNNDFTEVDEFRSMTAGVATIFVRSGDDFIRIS 141

Query: 220 TSLI-ENGKRPVGTSISDEVWTYV-MSQNAVYKGTANVLGTELITAYAPLLDANDDVIGM 277
           TSL  ++G R +GT +  +   Y  +     Y G A +     +T Y+P+ D++  +I  
Sbjct: 142 TSLSKQDGTRAIGTVLDRKGAAYERLIAGQSYVGKAVLFDRYYMTQYSPVRDSSGKIIAA 201

Query: 278 VFVGAPQTDAIAAKNDARNKIIM-----LALFGILIAFLITSYSNRKI---TKPIEEL-- 327
           +FVG   TDA   + D      +     LAL      +L+     + +    K + EL  
Sbjct: 202 LFVGFDYTDAQKTQFDNLKSFRIGSTGSLALLDDKGTWLVPPAGVKSLEGAAKSVAELAS 261

Query: 328 KKGTEEF---GNGNYDYKTTVKTGDELQELSDSFNKMAENVKNLMKTMDMDKLELANLLN 384
           K G  +F   G+ NY        G     ++    K    V   + T       LA L+ 
Sbjct: 262 KPGKAQFWDDGDDNYYSVGQPFAGGPWTVIASMPRKEISEVTWHVGTQLAIGSLLAMLIA 321

Query: 385 NVSDVMNRVAK----GDFTARADESRENN---KLEKAINTAVSNVADLIKELREELDLLN 437
            +S +    +K     +   +AD     +   +L    N  +  ++    ++ E L  + 
Sbjct: 322 VISAIWLLRSKLRPLSELVRQADALGAGDLSVRLNVTSNDEIGQLSGSFNKMSEALSSMV 381

Query: 438 IQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAE 497
             I+    E+       + ++  A +  E  S +   +  + EE  +T  N  +     E
Sbjct: 382 SHIRTAAQEVSTRANVLSGLSGGAFEGMEQQSGEITSMAGAVEEFSATSMNIADNMGNTE 441

Query: 498 ETVKSSEEIKENSEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKD 557
              + ++E  + + IG   +E A S +Q I   +    K I  LG+  ++I  + G+I  
Sbjct: 442 ---RLAQENAQQTRIGRTSMEEASSSLQQIATSLSSTAKVIDTLGQRSQEIGSIVGVITS 498

Query: 558 IAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIED 617
           IA+QT LLALNA+IEAARAG+ G+GFAVVA E+++LA   +++ ++I+  I  +     +
Sbjct: 499 IADQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTREATDEISGMIASIQQETGN 558

Query: 618 TVDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGALKN 677
            +    +G   + +G+    +V  AL +I E    +  +   I    Q  S        N
Sbjct: 559 AISTMQQGNTLMQEGLSLNAKVASALAQIDEQSRSAGHQFAAITTATQEQSSTATMLSSN 618

Query: 678 AQDIAALSEEFTATAEEVTASTEELNSIIEEIR 710
            Q IA  + E       +  + +ELN +  E+R
Sbjct: 619 LQSIAMANSEQRQVMSNLAITAQELNGLATELR 651