Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 839 a.a., methyl-accepting chemotaxis sensory transducer from Synechococcus elongatus PCC 7942

 Score =  132 bits (333), Expect = 6e-35
 Identities = 104/444 (23%), Positives = 206/444 (46%), Gaps = 42/444 (9%)

Query: 289 AAKNDARNKIIMLALFGIL--------IAFLITSYSNRKITKPIEELKKGTEEFGNGNYD 340
           A+  +ARN++++ ++  +         IA  + + + ++    +E L +  ++  NG+++
Sbjct: 400 ASTPEARNRVVLASMASMAVAGAASAGIALQLQNRTGKRYRDLLERLNEQCQQMSNGDFE 459

Query: 341 YKTTVKTGDELQELSDSFNKMAENV-------KNLMKTMDMDKLELANLLNNVSDVMNRV 393
               V   D++  L+  F++M   +       +  + T++  +  L N +  + D +  V
Sbjct: 460 TPLQVGGNDDVGMLALRFDRMRSVLGDRINRQEKRLTTLEQQREGLQNQVIRLLDDVEGV 519

Query: 394 AKGDFTARADESRENNKLEKAINTAVSNVADLIKELREELDLLNIQIQKVEDELKGAEET 453
           A GD T +A+ +                 AD++  +    D  N+ IQ + + +    + 
Sbjct: 520 AHGDLTVQAEVT-----------------ADVLGAVA---DSFNLTIQNLREIVAQVRDA 559

Query: 454 ATQVAEAATQVAEAASDQSAKLQESSEELESTY-------ENAKEVYSAAEETVKSSEEI 506
           A QV  AAT   ++A + SA+    +EEL +         E+ + V  +A E    +   
Sbjct: 560 ALQVNAAATDNEQSAKNLSAEALHQAEELAAALNSVQVMTESIQRVAISASEAESVARAA 619

Query: 507 KENSEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLA 566
            + +  G E V+  +S +  I   + E  + +K L E  ++I+++  LI  +A +T LLA
Sbjct: 620 SQTALKGGEAVDKTLSGILRIRETVAETTRKVKKLAESSQEISKIVALISQVASRTNLLA 679

Query: 567 LNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIEDTVDLGLKGK 626
           LNASIEAARAG AG+GFA+VA E++ LA+   KS ++I   +  + S     +    +G 
Sbjct: 680 LNASIEAARAGQAGRGFAIVADEVRQLADRAAKSSKEIEQIVLKIQSETGLVMTAMEEGT 739

Query: 627 DEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQDIAALSE 686
            +V +G    ++   AL +I +   +    +  I       +  +    +  Q +   ++
Sbjct: 740 QQVIQGTRLAEQARGALDEIIQVSTKIDDLVQSITADTVQQTAMSRSMAEVMQSVETTAQ 799

Query: 687 EFTATAEEVTASTEELNSIIEEIR 710
             +  A++V AS + L +I   +R
Sbjct: 800 NTSQEAQQVAASLQGLVNIAGTLR 823



 Score = 36.6 bits (83), Expect = 5e-06
 Identities = 76/386 (19%), Positives = 138/386 (35%), Gaps = 60/386 (15%)

Query: 400 ARADESRENNKLEKAINTAVSNVADLI---------KELREELDLLNIQIQKVEDELKGA 450
           A A E+ E    E A+  A++  A+ +         + L  E+DL   Q     DE    
Sbjct: 192 AEAAEAEETAVAEPAVEEAIAPAAETLIASEPEAIPEPLSPEVDLAESQPPITADETVVE 251

Query: 451 EETATQVAEAATQVAEAASDQSAKLQESSEELESTY-----ENAKEVYSAAEETVKSSEE 505
            + A + A A  +  E AS+ +A      E    ++     E AKEV  AAE  V    E
Sbjct: 252 VDLAAEFA-ALAEPEEVASEPAASTAGLEEPGPVSFDAIADEVAKEVLGAAETAVAPQPE 310

Query: 506 IK-------ENSEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDI 558
           +K       EN        E A    Q +T+ +                 +     +   
Sbjct: 311 LKASPAPVLENLPTPPNLAEAAAIARQPVTSPLRPQETKANRAAVAATPASNAPKALPTP 370

Query: 559 AEQT-----GLLALNASIEAARAGDAG-----------------KGFAVVASEIKALAEE 596
            +QT     GL+AL +++ AA  G  G                    AV  +    +A +
Sbjct: 371 PKQTAETRVGLIALVSALAAAAVGVVGWQASTPEARNRVVLASMASMAVAGAASAGIALQ 430

Query: 597 IKKS--------VEDINHTIDGV-NSRIEDTVDLGLKGKDEVDKGVIAIDEVNDALLKIK 647
           ++          +E +N     + N   E  + +G  G D+V    +  D +   L    
Sbjct: 431 LQNRTGKRYRDLLERLNEQCQQMSNGDFETPLQVG--GNDDVGMLALRFDRMRSVL---G 485

Query: 648 ESVNESAIKINGIKHGAQNASENTEGALKNAQDIA--ALSEEFTATAEEVTASTEELNSI 705
           + +N    ++  ++   +         L + + +A   L+ +   TA+ + A  +  N  
Sbjct: 486 DRINRQEKRLTTLEQQREGLQNQVIRLLDDVEGVAHGDLTVQAEVTADVLGAVADSFNLT 545

Query: 706 IEEIRVIAEELTHVSERVSEKSNQFE 731
           I+ +R I  ++   + +V+  +   E
Sbjct: 546 IQNLREIVAQVRDAALQVNAAATDNE 571