Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 1406 a.a., methyl-accepting chemotaxis sensory transducer with phytochrome sensor from Synechococcus elongatus PCC 7942

 Score =  135 bits (340), Expect = 1e-35
 Identities = 95/377 (25%), Positives = 181/377 (48%), Gaps = 30/377 (7%)

Query: 349  DELQELSDSFNKMAENVKNLMKTMDMDKLELANLLNNVSDVMNRVAKGDFTARADESREN 408
            D LQ+   + ++  +  +   +  +  + EL  LL++V D     ++GD T RAD S   
Sbjct: 1050 DFLQQAETARDRAEQLAQEQQQRTEAIQAELIQLLSDVEDA----SRGDLTVRADISAGE 1105

Query: 409  NKLEKAINTAVSNVADLIKELREELDLLNIQIQKVEDELKGAEETATQVAEAATQVAEAA 468
                      +S VAD+   L E L  + +Q++         ++  T +   A  +   A
Sbjct: 1106 ----------ISTVADIFNSLIESLRAVVVQVKA------STQKVNTSLDSDANSMQRLA 1149

Query: 469  SDQSAKLQESSEELESTYENAKEVYSAAEETVKSSEEIKENSEIGVEKVENAISRMQSIT 528
            +D  ++ ++  + L +  E +K +   +    +++E  +++S+  +   +     ++SI 
Sbjct: 1150 ADSQSQAEKIKKTLNAVAEMSKSILDVSNTANQAAEVARKSSQTAISSGQTMDETVRSIL 1209

Query: 529  NV---IDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAV 585
            ++   + E  K +K LGE  ++I++V  LI  IA QT LLA+NASIEAARAG+ G+GFAV
Sbjct: 1210 HLRETVAETAKKVKRLGESSQQISKVISLINQIALQTNLLAINASIEAARAGEEGRGFAV 1269

Query: 586  VASEIKALAEEIKKSVEDINHTIDGVNSRIEDTVDLGLKGKDEVDKGVIAIDEVNDALLK 645
            VA E+  LA     + ++I   ++ +     + V     G  +V +G   ++    +L +
Sbjct: 1270 VAEEVGQLATRSANATKEIEQIVETIQQETNEVVTAMETGTSQVVEGTQLVEATKKSLEE 1329

Query: 646  IKESVNESAIKINGIKHGAQNASENTEGALKNAQDIAALSEEFTATAEEVTAS------- 698
            I +   +    +  I     + S+ +       +++A  SEE + T+  ++AS       
Sbjct: 1330 IVQVSQQIDQLVQAISQATVSQSQTSNVVTNLMEEMAGFSEEISDTSRHISASLQATVAV 1389

Query: 699  TEELNSIIEEIRVIAEE 715
             ++L S ++  RV AEE
Sbjct: 1390 AQKLKSSVDTFRVGAEE 1406



 Score = 43.1 bits (100), Expect = 1e-07
 Identities = 66/295 (22%), Positives = 122/295 (41%), Gaps = 33/295 (11%)

Query: 444  EDELKGAEETATQVAEAAT-----QVAEAASDQSAKL-QESSEELESTYENAKEVYSAAE 497
            + E+    + ATQ+  A       Q AE A D++ +L QE  +  E+      ++ S  E
Sbjct: 1029 QSEIDLFSQLATQIGLALARADFLQQAETARDRAEQLAQEQQQRTEAIQAELIQLLSDVE 1088

Query: 498  ETVKSSEEIKENSEIGVEKVENAISRMQSITN-VIDELGKSIKMLGEDGKKINEVTGLIK 556
            +  +    ++ +   G       IS +  I N +I+ L   +  +    +K+N  T L  
Sbjct: 1089 DASRGDLTVRADISAG------EISTVADIFNSLIESLRAVVVQVKASTQKVN--TSLDS 1140

Query: 557  DIAEQTGLLALNASIEAAR-------AGDAGKGFAVVASEIKALAEEIKKSVEDINHTID 609
            D A     LA ++  +A +         +  K    V++     AE  +KS    + T  
Sbjct: 1141 D-ANSMQRLAADSQSQAEKIKKTLNAVAEMSKSILDVSNTANQAAEVARKS----SQTAI 1195

Query: 610  GVNSRIEDTVDLGLKGKD---EVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQN 666
                 +++TV   L  ++   E  K V  + E +  + K+   +N+ A++ N +   A N
Sbjct: 1196 SSGQTMDETVRSILHLRETVAETAKKVKRLGESSQQISKVISLINQIALQTNLL---AIN 1252

Query: 667  ASENTEGALKNAQDIAALSEEFTATAEEVTASTEELNSIIEEIRVIAEELTHVSE 721
            AS     A +  +  A ++EE    A     +T+E+  I+E I+    E+    E
Sbjct: 1253 ASIEAARAGEEGRGFAVVAEEVGQLATRSANATKEIEQIVETIQQETNEVVTAME 1307