Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 673 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  129 bits (323), Expect = 6e-34
 Identities = 93/344 (27%), Positives = 167/344 (48%), Gaps = 26/344 (7%)

Query: 379 LANLLNNVSDVMNRVAKGDFTARADESRENNKLEKAINTAVSNVADLIKELREELDLLNI 438
           L   L+ V+  +N +A GD T + D+            T     A+L +     +D L  
Sbjct: 346 LKRSLDEVNGALNVLASGDLTHKLDD------------TGHDEFAELSRNCNRLVDSLRS 393

Query: 439 QIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEE 498
            I  + D        + Q+A AA + +   S  +  +QE   +++       E+ S+A +
Sbjct: 394 LIASILDR-------SNQLAAAAEETSAITSQTTIGIQEQKSQVDQVATATTELSSSAHQ 446

Query: 499 TVKSSEEIKENSEIGVEKVEN----AISRMQSITNVIDELGKSIKMLGE---DGKKINEV 551
              S+++     +   E+ ++    A    ++I ++ DE+ K+ K++ +   D   I  +
Sbjct: 447 VNMSADDALSQIKQADEETQHMRTIADENKRTILSLADEVAKASKVINKVHSDSASIGSI 506

Query: 552 TGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGV 611
             +I+ IAEQT LLALNA+IEAARAG+ G+GFAVVA E+++LA   + S  +I   I+ +
Sbjct: 507 LDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTREIQQMIEVL 566

Query: 612 NSRIEDTVDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENT 671
               +  V +   G+++    V   ++ N AL  I  SV+++      I   AQ  +  +
Sbjct: 567 QQGTQQAVAVMQLGQNQAQSCVEKTEQANQALQTISHSVHKAYDAGTHIAQAAQEQNLVS 626

Query: 672 EGALKNAQDIAALSEEFTATAEEVTASTEELNSIIEEIRVIAEE 715
           +   +  + IAA+SEE    AE+   S+ E+  + EE++   +E
Sbjct: 627 QQVSEKLEHIAAISEETALGAEQTAKSSHEVARLAEELQSSVKE 670



 Score = 56.2 bits (134), Expect = 5e-12
 Identities = 71/355 (20%), Positives = 149/355 (41%), Gaps = 27/355 (7%)

Query: 386 VSDVMNRVAKGDFTARADESRE--NNKLEKAINTAVSNVADLIKELREELDLLNIQIQKV 443
           V++ M R+AK   T   D S +  N+    ++ T +  V  ++  +     ++   +++ 
Sbjct: 291 VTEQMKRLAKDIETVTNDISNQALNDINSASLRTLILVVIAIVVAVVISFAVVR-PLKRS 349

Query: 444 EDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEEL--------ESTYENAKEVYSA 495
            DE+ GA        +   ++ +   D+ A+L  +   L         S  + + ++ +A
Sbjct: 350 LDEVNGALNVLAS-GDLTHKLDDTGHDEFAELSRNCNRLVDSLRSLIASILDRSNQLAAA 408

Query: 496 AEETVKSSEEIKENSEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDG----KKINEV 551
           AEET      I   + IG+++ ++ + ++ + T  +      + M  +D     K+ +E 
Sbjct: 409 AEET----SAITSQTTIGIQEQKSQVDQVATATTELSSSAHQVNMSADDALSQIKQADEE 464

Query: 552 TGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGV 611
           T  ++ IA++     L+ + E A+A          ++ I ++ + I+   E  N  +  +
Sbjct: 465 TQHMRTIADENKRTILSLADEVAKASKVINKVHSDSASIGSILDVIRGIAEQTN--LLAL 522

Query: 612 NSRIEDTVDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENT 671
           N+ IE     G +G+       +  DEV     + ++S  E    I  ++ G Q A    
Sbjct: 523 NAAIE-AARAGEQGRGFA----VVADEVRSLASRTQDSTREIQQMIEVLQQGTQQAVAVM 577

Query: 672 EGALKNAQDIAALSEEFTATAEEVTASTEELNSIIEEIRVIAEELTHVSERVSEK 726
           +     AQ     +E+     + ++ S  +       I   A+E   VS++VSEK
Sbjct: 578 QLGQNQAQSCVEKTEQANQALQTISHSVHKAYDAGTHIAQAAQEQNLVSQQVSEK 632