Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 546 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  128 bits (322), Expect = 7e-34
 Identities = 91/330 (27%), Positives = 160/330 (48%), Gaps = 21/330 (6%)

Query: 378 ELANLLNNVSDVMNRVAKGDFTARADESR--ENNKLEKAINTAVSNVADLIKELREELDL 435
           +L  ++  +SD      +GD   R D+S   E + L +  N  +  +  LI  ++ +   
Sbjct: 223 QLDTMIAAISD-----GEGDLRGRLDDSGRDELSLLARTFNGLMMKLQQLIGTIKSDAVS 277

Query: 436 LNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELESTYENAKEVYSA 495
           L+ ++  +    K +E+ +T+      Q+A A    S           + +E A    +A
Sbjct: 278 LDARVTGLNHSAKESEKISTEQNANLEQIATAVHQLS----------HAVHEVASSSQNA 327

Query: 496 AEETVKSSEEIKENSEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLI 555
             +T  ++  IKE++ +    V  ++ R+Q +  V+    + I+ L  + K+I  V  +I
Sbjct: 328 LSDTEHANNLIKESNAV----VGQSVERVQQLAGVVSHASEVIQNLASESKQIVTVLDVI 383

Query: 556 KDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRI 615
           + IAEQT LLALNA+IEAARAG+ G+GFAVVA E++ LA   ++S EDI   + G+ S +
Sbjct: 384 RGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQQSTEDIQRMVAGLESGV 443

Query: 616 EDTVDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGAL 675
            + V     G  +VD  V A   +  AL ++ E+V+ +   I  I    +  S+  +   
Sbjct: 444 SEAVSAIDSGTRQVDSVVDASGSITKALAEVDEAVSRTKDLIYLIATATEQQSKVVDEVN 503

Query: 676 KNAQDIAALSEEFTATAEEVTASTEELNSI 705
           +N   +  LS+E          + +E+  I
Sbjct: 504 QNISSLNLLSQESIGVVRRTREAADEIAQI 533



 Score = 58.9 bits (141), Expect = 6e-13
 Identities = 68/299 (22%), Positives = 120/299 (40%), Gaps = 40/299 (13%)

Query: 303 LFGILIAFLITS-----YSNRKITKPIEELKKGTEEFGNGNYDYKTTVKTG--DELQELS 355
           LFGI+I  ++ S     Y  R +T  +E+L        +G  D +  +     DEL  L+
Sbjct: 195 LFGIIILVILASIVSVVYGPRLVTSRVEQLDTMIAAISDGEGDLRGRLDDSGRDELSLLA 254

Query: 356 DSFNKMAENVKNLMKTMDMDKL----------------------------ELANLLNNVS 387
            +FN +   ++ L+ T+  D +                            ++A  ++ +S
Sbjct: 255 RTFNGLMMKLQQLIGTIKSDAVSLDARVTGLNHSAKESEKISTEQNANLEQIATAVHQLS 314

Query: 388 DVMNRVAKGDFTARADESRENNKLEKAINTAVSNVADLIKELREELDLLNIQIQKVEDEL 447
             ++ VA     A +D    NN L K  N  V    + +++L   +   +  IQ +  E 
Sbjct: 315 HAVHEVASSSQNALSDTEHANN-LIKESNAVVGQSVERVQQLAGVVSHASEVIQNLASES 373

Query: 448 KGAEETATQVAEAATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEETVKSSEEIK 507
           K        +   A Q    A + + +   + E+       A EV + A  T +S+E+I+
Sbjct: 374 KQIVTVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQQSTEDIQ 433

Query: 508 E---NSEIGVEKVENAI-SRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQT 562
                 E GV +  +AI S  + + +V+D  G   K L E  + ++    LI  IA  T
Sbjct: 434 RMVAGLESGVSEAVSAIDSGTRQVDSVVDASGSITKALAEVDEAVSRTKDLIYLIATAT 492



 Score = 27.7 bits (60), Expect = 0.002
 Identities = 18/92 (19%), Positives = 45/92 (48%), Gaps = 14/92 (15%)

Query: 638 EVNDALLKIKESVNESAIKINGIKHGAQNASENTEGA--------------LKNAQDIAA 683
           E N  L +I  +V++ +  ++ +   +QNA  +TE A              ++  Q +A 
Sbjct: 298 EQNANLEQIATAVHQLSHAVHEVASSSQNALSDTEHANNLIKESNAVVGQSVERVQQLAG 357

Query: 684 LSEEFTATAEEVTASTEELNSIIEEIRVIAEE 715
           +    +   + + + ++++ ++++ IR IAE+
Sbjct: 358 VVSHASEVIQNLASESKQIVTVLDVIRGIAEQ 389