Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 559 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

 Score =  119 bits (298), Expect = 4e-31
 Identities = 83/265 (31%), Positives = 131/265 (49%), Gaps = 31/265 (11%)

Query: 440 IQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEET 499
           +++V D + GA       A+A +   + AS Q+  +  ++E+  +   N   V SAAEE 
Sbjct: 294 VKRVADTIAGAANQLEDAAKAVSGAVDTASHQATSIAAAAEQASA---NVATVASAAEEL 350

Query: 500 VKSSEEIKENSEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIA 559
             S +EI            NA+   Q+   ++  L  +   +G+       V  LI DIA
Sbjct: 351 TSSIQEISRQVHQSSTISTNAVKEAQNTNELVMGLAATATRIGD-------VVKLINDIA 403

Query: 560 EQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIEDTV 619
            QT LLALNA+IEAARAGDAGKGFAVVA+E+K+LA +  K+ +DI++ I  V S     V
Sbjct: 404 SQTNLLALNATIEAARAGDAGKGFAVVANEVKSLANQTAKATDDISNQIGAVQSATGQAV 463

Query: 620 DLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQ 679
           D  ++G   +   +  I E+ + +    E    + ++I                  +N Q
Sbjct: 464 D-AIRG---ITGTIAQISEIGETIAAAVEEQGAATLEI-----------------ARNVQ 502

Query: 680 DIAALSEEFTATAEEVTASTEELNS 704
             AA ++E T+T  +++A T +  S
Sbjct: 503 QAAAGTQEVTSTLSQLSAVTAQAGS 527



 Score = 38.9 bits (89), Expect = 7e-07
 Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 15/181 (8%)

Query: 553 GLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVN 612
           G+I+ +     L A + S+E   A D G     +A  +  L +  +++        D + 
Sbjct: 215 GVIRLVKVTERLAARDFSVEIP-ATDRGDEIGQLAKAVAVLRDGAREA--------DHLR 265

Query: 613 SRIEDTVDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTE 672
            R +     GLK + E ++    +   +     +K   +  A   N ++  A+  S   +
Sbjct: 266 QRQD-----GLKAEAEAERRRAMLSVADGFEGSVKRVADTIAGAANQLEDAAKAVSGAVD 320

Query: 673 GALKNAQDIAALSEEFTATAEEVTASTEELNSIIEEI-RVIAEELTHVSERVSEKSNQFE 731
            A   A  IAA +E+ +A    V ++ EEL S I+EI R + +  T  +  V E  N  E
Sbjct: 321 TASHQATSIAAAAEQASANVATVASAAEELTSSIQEISRQVHQSSTISTNAVKEAQNTNE 380

Query: 732 I 732
           +
Sbjct: 381 L 381