Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  128 bits (322), Expect = 8e-34
 Identities = 87/346 (25%), Positives = 166/346 (47%), Gaps = 30/346 (8%)

Query: 379 LANLLNNVSDVMNRVAKGDFTARADES---------RENNKLEKAINTAVSNVADLIKEL 429
           L N L+ V++ +N +A G+ T + D+S         R  N+L  ++ T +  + D   +L
Sbjct: 347 LKNSLDKVNNALNILASGNLTHKLDDSGHDEFAELSRNCNRLVDSLRTLIQGILDRSNQL 406

Query: 430 REELDLLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELESTYENA 489
               +  +    +    ++  +    QVA A TQ++ +A   S    E+  ++    E A
Sbjct: 407 AAAAEETSAITAQTTAGIQEQKNQVDQVATATTQLSSSAMQVSTSADEALNQIRQADEEA 466

Query: 490 KEVYSAAEETVKSSEEIKENSEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKIN 549
           + + + A+E  ++                     + ++ + + + G+ I  +  D   I 
Sbjct: 467 QHMRAIADENKRT---------------------ILALADEVAKAGQVINKVHSDSASIG 505

Query: 550 EVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTID 609
            +  +I+ IAEQT LLALNA+IEAARAG+ G+GFAVVA E+++LA   + S ++I   I 
Sbjct: 506 SILDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTQEIQQMIQ 565

Query: 610 GVNSRIEDTVDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASE 669
            +    ++ V +   G+ + +  V   ++ N AL  I  +V+ +      I + AQ  + 
Sbjct: 566 VLQQGTQEAVSVMELGRQQANSCVEKTEQANVALESISNAVHYAHDSGTHIANAAQEQNL 625

Query: 670 NTEGALKNAQDIAALSEEFTATAEEVTASTEELNSIIEEIRVIAEE 715
            ++   +  + IAA+SEE    A++   S+ ++  + EE++    E
Sbjct: 626 VSQQVSEKLEHIAAISEETATGADQTAQSSHQVAQLAEELQASVGE 671



 Score = 42.4 bits (98), Expect = 8e-08
 Identities = 78/398 (19%), Positives = 155/398 (38%), Gaps = 90/398 (22%)

Query: 408 NNKLEKAINTAVSNVADLIKELREELDLLNIQIQKVEDELKGAEETATQVAEAATQVAEA 467
           ++K  K +    S    L K    ELD LN  IQ  ED L G      Q+        ++
Sbjct: 71  HSKQSKELPQVRSQFTSLSKGFITELDQLNRIIQGHEDNLGG------QIKSLRANY-QS 123

Query: 468 ASDQSAKLQESSEE----LESTYENAKEVYSAAEETVK----------SSEEIKENSEIG 513
            +D S K+ ++ E+     ES  +N + +  AA++T            S +  +      
Sbjct: 124 FNDNSLKMMQAREQSLQTQESLVDNLESLEGAADDTASLLLDLIDLETSQDPTEREIAAT 183

Query: 514 VEKVENAISRMQSITNVIDELGKSIK------------MLGEDGKKINEVTGLIKDIAEQ 561
              ++N+ S +  IT+  D +    K            ++ E   K+  V+   + + +Q
Sbjct: 184 ASNIDNSFSNL--ITSSYDLVNAKEKSKYETILKELDYIISEAQNKLEYVSRHWEGVIDQ 241

Query: 562 TGLLALNASIEAARAGDAGKG-------------FAVVASEIKALAEEIKKSVEDINHTI 608
             L  +N   EA++      G             F + AS+   L   ++ +   +N ++
Sbjct: 242 EALDNINT--EASKVFTMLNGPDSILKRKGQQLDFNLQASQ---LLNTVESNATAVNQSM 296

Query: 609 DGVNSRIEDTVD-LGLKGKDEVDKG------------VIAI--------------DEVND 641
             +N  IE T   + +K  DE+D              V+A+              D+VN+
Sbjct: 297 GSLNKAIESTSQAVSVKAIDEIDSASYKTLALVLIAIVVAVLVSIAVIRPLKNSLDKVNN 356

Query: 642 AL---------LKIKESVNESAIKIN-GIKHGAQNASENTEGALKNAQDIAALSEEFTAT 691
           AL          K+ +S ++   +++        +     +G L  +  +AA +EE +A 
Sbjct: 357 ALNILASGNLTHKLDDSGHDEFAELSRNCNRLVDSLRTLIQGILDRSNQLAAAAEETSAI 416

Query: 692 AEEVTASTEELNSIIEEIRVIAEELTHVSERVSEKSNQ 729
             + TA  +E  + ++++     +L+  + +VS  +++
Sbjct: 417 TAQTTAGIQEQKNQVDQVATATTQLSSSAMQVSTSADE 454