Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 698 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  132 bits (331), Expect = 8e-35
 Identities = 96/338 (28%), Positives = 162/338 (47%), Gaps = 20/338 (5%)

Query: 379 LANLLNNVSDVMNRVAKGDFTARADESRENNKLEKAINTAVSNVADLIKELREELDLLNI 438
           + N +    D    +A+GD T+  D SR +                L+ +L      L  
Sbjct: 369 IVNPMRQAIDTFKLIAEGDLTSDIDISRRDE------------AGQLLCQLATMQATLKA 416

Query: 439 QIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEE 498
            + ++++  +  ++  +Q+      VA  +  Q   +Q  +   E   ++ +EV   A E
Sbjct: 417 MLDQIQEASRQMDQRCSQLESEVALVAAKSQQQLDDVQSIAAATEEFSQSVQEVAGHAGE 476

Query: 499 TVKSSEEIKENSEIGVEKVENAISRMQSITNVIDEL----GKSIKMLGEDGKKINEVTGL 554
           T  +++    NSE  VE+    I R  ++TN + E       ++  L     +I ++T +
Sbjct: 477 TASAAQ----NSERLVEESNTQIGRSMAVTNRVVEAVTGSSATLHELNTAIDQIGQITQV 532

Query: 555 IKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSR 614
           IK+IA+QT LLALNA+IEAARAG+AG+GFAVVA E++ LAE    S  DI   I  +   
Sbjct: 533 IKEIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERTTTSTADITGNIGAIQGA 592

Query: 615 IEDTVDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGA 674
             + V+   +   EV++G+  + E    L  I  +  + +     I   +Q  S  ++  
Sbjct: 593 THEAVNRMEQAVREVEEGIGMMRESVAGLEGITAASQQVSAMARQISEASQQQSIASQEV 652

Query: 675 LKNAQDIAALSEEFTATAEEVTASTEELNSIIEEIRVI 712
             + + I+ L E+ TATA+E   +TE L S  E++R I
Sbjct: 653 NGSMEHISVLIEQNTATAQEAQRATEALVSTAEDLRAI 690



 Score = 37.4 bits (85), Expect = 3e-06
 Identities = 71/391 (18%), Positives = 157/391 (40%), Gaps = 27/391 (6%)

Query: 343 TTVKTGDELQELSDSFNKMAENVKNLMKTMDMDKLELANLLNNVSDVMNRVA---KGDFT 399
           T V TG  L  L +    + E  +  ++   +    LA L  N S +M  +    K +  
Sbjct: 169 TAVVTGIGLSGLQEGNASLQEQYQRKLEPTTVVNEVLALLGENRSQIMLALQHDPKSELA 228

Query: 400 ARADESRENNKLEKAINTAVSNVADLIKELREELDLLNIQIQKVEDELKGAEETATQVAE 459
              D   E + LEK +       A L  E  ++L L   + Q VE   +  ++ + +   
Sbjct: 229 KLHDHGLEVH-LEKTLANRQQINAQL--EALQKLPLSEKERQLVEQLGEARKKFSAEGVN 285

Query: 460 AATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEETVKSSEEIKENSEIGVEKVEN 519
           AA    +A     A +   ++ +   Y   ++   A  + +K+S   + + E    + EN
Sbjct: 286 AARDALKAGDFHQASVLLLTK-INPIYGQVQQAGKALVDELKASA--RADFERAQARYEN 342

Query: 520 AISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLA---LNASIEAARA 576
            +  M   T        ++ ++G     +  +   ++   +   L+A   L + I+ +R 
Sbjct: 343 ILWAMALATLA----ALALAVVG-GWLLVRAIVNPMRQAIDTFKLIAEGDLTSDIDISRR 397

Query: 577 GDAGK---GFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIEDTVDLGLKGKDEVDKGV 633
            +AG+     A + + +KA+ ++I+++   ++     + S +        +  D+V    
Sbjct: 398 DEAGQLLCQLATMQATLKAMLDQIQEASRQMDQRCSQLESEVALVAAKSQQQLDDVQSIA 457

Query: 634 IAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQDIAALSEEFTATAE 693
            A +E + ++ ++     E+A         AQN+    E +        A++        
Sbjct: 458 AATEEFSQSVQEVAGHAGETA-------SAAQNSERLVEESNTQIGRSMAVTNRVVEAVT 510

Query: 694 EVTASTEELNSIIEEIRVIAEELTHVSERVS 724
             +A+  ELN+ I++I  I + +  ++++ +
Sbjct: 511 GSSATLHELNTAIDQIGQITQVIKEIADQTN 541