Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 639 a.a., cache domain-containing protein from Methanococcus maripaludis JJ

 Score =  231 bits (590), Expect = 7e-65
 Identities = 164/564 (29%), Positives = 278/564 (49%), Gaps = 71/564 (12%)

Query: 7   KKLGTKMLIFSIISVLVPILVFGFVANDTIAGILDDNAQKSINTDIKIADQIIESRFIEF 66
           K+LGTK++I+SII+ L+PI++ G V+ DTI   +   AQ+ IN D+  A+ ++  +  + 
Sbjct: 8   KRLGTKLIIYSIITALIPIVMLGAVSTDTINTEMTKQAQEKINDDLNTAESVVNLKLDKI 67

Query: 67  ESICEYATNKADVITSVSNKDSEKLSIGVETFRAAINSDFVGVLDSNGNTIA---STAGP 123
            S+ +Y  +    I  + N D+++L     +++     DFV   D  GN +A   S    
Sbjct: 68  SSLNKYIISNEKTINILKNNDTKELKTLAISYKNTSAPDFVVFFDGQGNVVARSNSDVTG 127

Query: 124 DIQIGSVAQKLITSGTKRSFEPISANTAYKINK---------------NYKVENVDSALG 168
           D     + +K++ S    S E +  ++    N                +Y     DSA+ 
Sbjct: 128 DNSYEDLFKKVVNSTGYTSIEVLDKDSIKYENVGELVNIDIKGTDDSIDYSDSVQDSAMA 187

Query: 169 MVVTYPIYE-NGNVVGSIIIIDILNNNNEIVDQVKADTGDEATFSLGKQRISTSLIENGK 227
           +V   PIY+ NG ++G+ +  DILN +  IVD VK  + D  T  L   R+ST++ +NG 
Sbjct: 188 LVSIEPIYDKNGKLLGAAMAADILNKDYSIVDTVKDASKDATTIFLDGVRVSTNVQDNGG 247

Query: 228 RPVGTSISDEVWTYVMSQNAVYKGTANVLGTELITAYAPLLDANDDVIGMVFVGAPQTDA 287
           R +GT +S EV+ +V+     Y G A V+    +TAY P+ D+++++IGM+FVG P++  
Sbjct: 248 RAIGTLVSKEVYNHVVLDGKTYYGRAFVVNEWYLTAYEPIYDSDNEIIGMLFVGTPESKF 307

Query: 288 IAAKNDARNKIIMLALFGILIAFLITSYSNRKITKPIEELKKGTEEFGNGNYDYKTTVKT 347
           +A + + RN+  ++ L G+LIA +++   NR I KP+E+LK+G E   NG YD K  V +
Sbjct: 308 LALQANVRNQTFVVGLIGLLIALIVSYLINRGIIKPLEQLKQGAEWVSNGRYDQKVIVDS 367

Query: 348 GDELQELSDSFNKMAENVKNLMKTMDMDKLELANLLNNVSDVMNRVAKGDFTARADESRE 407
            DE  EL+ +FNKMA  +                   N+SD   +    +     +E +E
Sbjct: 368 DDEFGELAKAFNKMATQI-------------------NISDEKLKKHAEELKTSYNELKE 408

Query: 408 NNKLEKAINTAVSNVADLIKELREELDLLNIQIQKVEDELKGAEETATQVAEAATQVAEA 467
            +KL+  +   VS+      ELR  L  +   ++ V   L G   T     +   QVA+ 
Sbjct: 409 LDKLKSELIAIVSH------ELRTPLTSIKGYVELV---LDGTMGTINDSQKKCLQVADD 459

Query: 468 ASDQSAKLQESSEELESTYENAKEVYS-------------------AAEETVKSSEEIKE 508
              +  +L ES  +L        E+Y                    A E+ +K ++E++ 
Sbjct: 460 NIVRLRRLIESMLDLSKIERGELEMYREKVNLRAIVCDVIEYLKPLATEKNIKLNKEVE- 518

Query: 509 NSEIGVEKVENAISRMQSITNVID 532
             +I +E  ++ I+  Q +TN+I+
Sbjct: 519 --DIAIEADKDRIT--QVLTNLIE 538



 Score = 33.9 bits (76), Expect = 3e-05
 Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 28/196 (14%)

Query: 500 VKSSEEIKENSEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIA 559
           +K  E++K+    G E V N     + I +  DE G+  K   +   +IN     +K  A
Sbjct: 341 IKPLEQLKQ----GAEWVSNGRYDQKVIVDSDDEFGELAKAFNKMATQINISDEKLKKHA 396

Query: 560 EQTGLLALNASIEAARAGDAGKG--FAVVASEIKALAEEIKKSVEDINHTIDGVNSRIED 617
           E+     L  S    +  D  K    A+V+ E++     IK  VE +   +DG    I D
Sbjct: 397 EE-----LKTSYNELKELDKLKSELIAIVSHELRTPLTSIKGYVELV---LDGTMGTIND 448

Query: 618 TVDLGLKGKDEVDKGVIAIDEVNDALLKI-----------KESVNESAIKINGIKHGAQN 666
           +    L+  D+    ++ +  + +++L +           +E VN  AI  + I++    
Sbjct: 449 SQKKCLQVADD---NIVRLRRLIESMLDLSKIERGELEMYREKVNLRAIVCDVIEYLKPL 505

Query: 667 ASENTEGALKNAQDIA 682
           A+E      K  +DIA
Sbjct: 506 ATEKNIKLNKEVEDIA 521



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 33/172 (19%), Positives = 74/172 (43%), Gaps = 18/172 (10%)

Query: 577 GDAGKGFAVVASEIKALAEEIKKSVEDINHT------IDGVNSRIEDTVDLGLKGKDEVD 630
           G+  K F  +A++I    E++KK  E++  +      +D + S +   V   L+      
Sbjct: 372 GELAKAFNKMATQINISDEKLKKHAEELKTSYNELKELDKLKSELIAIVSHELRTPLTSI 431

Query: 631 KGVI------AIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQDIAAL 684
           KG +       +  +ND+  K  +  +++ +++  +     + S+   G L+  ++   L
Sbjct: 432 KGYVELVLDGTMGTINDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNL 491

Query: 685 SEEFTATAEEV----TASTEELNSIIEEIRVIAEE--LTHVSERVSEKSNQF 730
                   E +    T    +LN  +E+I + A++  +T V   + E + +F
Sbjct: 492 RAIVCDVIEYLKPLATEKNIKLNKEVEDIAIEADKDRITQVLTNLIENAIKF 543