Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 654 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  135 bits (339), Expect = 9e-36
 Identities = 101/359 (28%), Positives = 173/359 (48%), Gaps = 44/359 (12%)

Query: 358 FNKMAENVKNLMKTMDMDKLELANLLNNVSDVMNRVAKGDFTARADESREN--NKLEKAI 415
           F  +A ++ +L++T D         L +V+ V+  +A+GD T R     E   N L+   
Sbjct: 293 FLMLANSLNSLIETSDRG-------LQDVARVLMAMAEGDLTTRIYNEYEGTFNDLKNYS 345

Query: 416 NTAVSNVADLIKELREELDLLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKL 475
           N     ++ +I+++++  D +N                ++++A+    ++    +Q++ L
Sbjct: 346 NQTAEKLSYMIRDIQKAADTINT--------------ASSEIAQGNADLSSRTEEQASSL 391

Query: 476 QESSEELESTYENAKEVYSAAEETVKSSEEIKENSEIGVEKVENAISRMQSITNVIDELG 535
           +E+S  +E      K     A +    + +  + +E G E ++  +  M SI        
Sbjct: 392 EETSASMEELTGTVKLNADNASQANALASKAADVAEDGGELIQQVVQTMASIN------- 444

Query: 536 KSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAE 595
                  E  +KI ++ G+I  IA QT +LALNA++EAARAG+ G+GFAVVASE+++LA+
Sbjct: 445 -------ESARKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQ 497

Query: 596 EIKKSVEDINHTIDGVNSRIEDTVDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAI 655
               + +DI   I    S+I+   +L  K  D + + VIAI  VND + +I  + NE AI
Sbjct: 498 RSANAAKDIKALISDSVSKIDSGNNLVGKSGDTMKEIVIAIKRVNDIMAEIASASNEQAI 557

Query: 656 KINGIKHGAQNASENTEGALKNAQDIAALSEEFTATAEEVTASTEELNSIIEEIRVIAE 714
            I+ I        E T       Q  AAL EE  A AE + +  ++L   +   +V  E
Sbjct: 558 GIDEIGKAVVQMDEMT-------QQNAALVEEAAAAAESMQSQAQQLADSVANFKVDEE 609



 Score = 29.3 bits (64), Expect = 7e-04
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 12/125 (9%)

Query: 609 DGVNSRIEDTVDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNAS 668
           + +NS IE T D GL+   +V + ++A+ E  D   +I    NE     N +K+ +   +
Sbjct: 298 NSLNSLIE-TSDRGLQ---DVARVLMAMAE-GDLTTRI---YNEYEGTFNDLKNYSNQTA 349

Query: 669 ENTEGALKNAQDIA----ALSEEFTATAEEVTASTEELNSIIEEIRVIAEELTHVSERVS 724
           E     +++ Q  A      S E      ++++ TEE  S +EE     EELT   +  +
Sbjct: 350 EKLSYMIRDIQKAADTINTASSEIAQGNADLSSRTEEQASSLEETSASMEELTGTVKLNA 409

Query: 725 EKSNQ 729
           + ++Q
Sbjct: 410 DNASQ 414