Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 677 a.a., methyl-accepting chemotaxis protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  146 bits (369), Expect = 3e-39
 Identities = 135/563 (23%), Positives = 244/563 (43%), Gaps = 65/563 (11%)

Query: 170 VVTYPIYENGNVVGSII-IIDILNNNNEIVDQVKADTGDEATFSLGKQRISTSLIENGKR 228
           VV  P+  +G V+G I   ID+     E++D ++      A F + K     +  +    
Sbjct: 161 VVASPVKRDGRVIGVIYGAIDLARFATEVIDPIRIGKTGYA-FLVSKAGFIAAHPDKS-H 218

Query: 229 PVGTSISDEVWTYVMSQNA------VYKGTANVL--GTELITAYAPLLDANDDVIGMVFV 280
            +  ++ DE W   M +N        +KG   +L   TE  T +   +  + D I     
Sbjct: 219 ILTLNLKDEPWAAPMFRNPSGEVEYTFKGKDKILVYTTEKRTGWQLAVTVDMDEIN---- 274

Query: 281 GAPQTDAIAAKNDARNKIIMLALFGILIAFLITSYSNRKITKPIEELKKGTEEFGNGNYD 340
                +++AA    RN  + + +  +L+  ++     R I   + +         +G+  
Sbjct: 275 -----ESVAA---IRNTTLAVGIIMLLVTSVVVFLIVRSIVNALNKGVDFARAVADGDLG 326

Query: 341 YKTTVKTGDELQELSDSFNKMAENVKNLMKTMDMDKLELANLLNNVSDVMNRVAKGDFTA 400
               +   DE+  L+++   M   +K ++ T +                         T 
Sbjct: 327 QDLALTRQDEIGTLAEALRVMVRRLKEMIATSEAK-----------------------TQ 363

Query: 401 RADESRENNKLEKAINTAVSNVADLIKELREELDLLNIQIQKVEDELKGAEETATQVAEA 460
            A+E  +  K E A   A +  A      RE L L   Q++ + + +  A E      E 
Sbjct: 364 EAEE--QTRKAEVATREAEAARAQAENARREGLLLAASQLEGIVERISSASE------EL 415

Query: 461 ATQVAEAASDQSAKLQESSEE---LESTYENAKEVYSAAEETVKSSEEIKENSEIGVEKV 517
           + QV +AA   S +LQ ++E    +E    +  E+   A E  +SSE  +  ++ G   V
Sbjct: 416 SAQVEQAARGSSTQLQRTTEAATAMEEMNASVMEIARNAAEAAESSEHARREADEGASVV 475

Query: 518 ENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAG 577
            + +  +  +     EL  S+ MLG   + I ++  +I DIA+QT LLALNA+IEAARAG
Sbjct: 476 GSVVEAISDVDAKTGELKLSLDMLGTRAENIGQIMTVITDIADQTNLLALNAAIEAARAG 535

Query: 578 DAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIEDTVDLGLKGKDEVDKGVIAID 637
           +AG+GFAVVA E++ LAE+   + +++   +  + S  +D +    +G DE    V    
Sbjct: 536 EAGRGFAVVADEVRKLAEKTMNATKEVGEAVRAIQSGTKDNI----RGMDEAAMSVGRST 591

Query: 638 EV----NDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQDIAALSEEFTATAE 693
           E+     DAL +I   +  SA ++  I   ++  S  +E   +   ++  ++ E      
Sbjct: 592 ELASIAGDALARIVGLIEGSADQVRAIATASEEQSAASEQINRGTDEVNRIASETAGAMG 651

Query: 694 EVTASTEELNSIIEEIRVIAEEL 716
           E   +  EL+++ +E+R +  +L
Sbjct: 652 ECAKAMTELSAMTQELRSLIVKL 674



 Score = 33.1 bits (74), Expect = 5e-05
 Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 26/185 (14%)

Query: 544 DGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIKKSVED 603
           D  +INE    I++     G++ L  +            F +V S + AL     K V+ 
Sbjct: 269 DMDEINESVAAIRNTTLAVGIIMLLVTSVVV--------FLIVRSIVNAL----NKGVDF 316

Query: 604 INHTIDGVNSRIEDTVDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAIKINGIKHG 663
                DG   +     DL L  +DE+  G +A + +   + ++KE +  S  K       
Sbjct: 317 ARAVADGDLGQ-----DLALTRQDEI--GTLA-EALRVMVRRLKEMIATSEAKTQE---- 364

Query: 664 AQNASENTEGALKNAQDIAALSEEFTATAEEVTASTEELNSIIEEIRVIAEELTHVSERV 723
           A+  +   E A + A+  AA ++   A  E +  +  +L  I+E I   +EEL+   E+ 
Sbjct: 365 AEEQTRKAEVATREAE--AARAQAENARREGLLLAASQLEGIVERISSASEELSAQVEQA 422

Query: 724 SEKSN 728
           +  S+
Sbjct: 423 ARGSS 427