Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 630 a.a., methyl-accepting chemotaxis protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  170 bits (430), Expect = 2e-46
 Identities = 163/673 (24%), Positives = 285/673 (42%), Gaps = 94/673 (13%)

Query: 76  KADVITSVSNKDSEKLSIGVETFRAAINSDFVGVLDSN----GNTIASTAGPDIQIGSVA 131
           K ++  +V   D  K+    + +    ++DF+ V D++    G   +  AG DI   + A
Sbjct: 26  KPELAQAVVAGDHGKVMALAKRYMHDADADFMTVSDASLKVVGRGHSDKAGDDISNQATA 85

Query: 132 QKLITSGTKRSFEPISANTAYKINKNYKVENVDSALGMVVTY------PIYENGNVVGSI 185
           +K +   T                      +V    G VV +      P+  +G VVGS+
Sbjct: 86  RKALQGQT----------------------SVGVVSGTVVPFSVRASAPVMLDGRVVGSV 123

Query: 186 IIIDILNNNNEIVDQVKADTGDEATFSLGKQRISTSLIE-NGKRPVGTSISD-EVWTYVM 243
            +   +       D +K  +G E T   G  R  T++I+ +GKR +GT + + +V   V+
Sbjct: 124 SLGRSMVTE-AFADSIKGYSGVEFTVFKGDTRAMTTIIKADGKRAIGTKMDNPKVLETVL 182

Query: 244 SQNAVYKGTANVLGTELITAYAPLLDANDDVIGMVFVGAPQTDAIAAKNDARNKIIMLAL 303
            + A +     +LG E  TAY P+ D +  V+GM F+G P     AA        + ++L
Sbjct: 183 QRGAQFLARNAILGKEYQTAYWPIKDIDGAVVGMWFIGVPLASIQAAIAKVEQSTVGVSL 242

Query: 304 FGILIAFLITSYSNRKITKPIEELKKGTEEFGNGNYDYKTTVKTGDELQELSDSFNKMAE 363
             + +      +  R + +PI        +   G  +    V + DE+ +L+D+   M  
Sbjct: 243 GIMFVMAAAAFFFARSLARPIGITTAFAGKVAAGQMNETLDVHSNDEVGQLADALRTMVS 302

Query: 364 NVKNLMKTMDMDKLELANLLNNVSDVMNRVAKGDFTARADESR---ENNKLEKAINTA-- 418
           ++K  +          A            V     T  ADE+R   EN + E  +  A  
Sbjct: 303 SLKEKIAEAQAQSERAAE---------ETVRAQQATREADEARREAENARREGMLQAADR 353

Query: 419 VSNVADLIKELREELDLLNIQIQKVEDELKGAEETATQVAEAATQVAEAASDQSAKLQES 478
           +S + +++    E+L        ++E   +GA   + +  E AT +              
Sbjct: 354 LSGIVNVVGAASEQLSA------QIEQSSRGALLQSQRAGETATAM-------------- 393

Query: 479 SEELESTYENAKEVYSAAEETVKSSEEIKENSEIGVEKVENAISRMQSITNVIDELGKSI 538
            EE+ +T     EV  +A E   SS+  ++ +E G   V++ +  +  +    + L + +
Sbjct: 394 -EEMNAT---VLEVARSASEAAASSDATRDKAEAGAGIVKSVVDGIAGVQRRSETLQEGM 449

Query: 539 KMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEEIK 598
             LG+  ++I  +  +I DIA+QT LLALNA+IEAARAGDAG+GFAVVA E++ LAE+  
Sbjct: 450 NDLGKRAEEIGRIMNVISDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEKTM 509

Query: 599 KSVEDINHTIDGVNSRIEDTVDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAIKIN 658
            + +++   I G+       V    +   E++       E  +AL +I            
Sbjct: 510 NATKEVGEAIVGIQKGTHTNVAHVGETVREIETATKHAHEAGNALHEIVRL--------- 560

Query: 659 GIKHGAQNASENTEGALKNAQDIAALSEEFTATAEEVTASTEELNSIIEEIRVIAEELTH 718
                        E A    + IA  SEE +A ++E+  + EE+N I  E      +   
Sbjct: 561 ------------AEAASDQVRSIATASEEQSAASDEINRAIEEVNRIASETSDAMGQSAQ 608

Query: 719 VSERVSEKSNQFE 731
               ++E++ Q +
Sbjct: 609 AVGELAEQAQQLQ 621



 Score = 43.5 bits (101), Expect = 3e-08
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 17/197 (8%)

Query: 346 KTGDELQELSDSFNKMAENVKNLMKTMDMDKLELANLLNNVSDVMNRVAKGD----FTAR 401
           +  + LQE  +   K AE +  +M  +  D  +  NLL  ++  +     GD    F   
Sbjct: 440 RRSETLQEGMNDLGKRAEEIGRIMNVIS-DIADQTNLLA-LNAAIEAARAGDAGRGFAVV 497

Query: 402 ADESRENNKLEKAINTAVSNVADLI----KELREELDLLNIQIQKVEDELKGAEETATQV 457
           ADE R   KL +    A   V + I    K     +  +   ++++E   K A E    +
Sbjct: 498 ADEVR---KLAEKTMNATKEVGEAIVGIQKGTHTNVAHVGETVREIETATKHAHEAGNAL 554

Query: 458 AEAATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEETVKSSEEIKENSEIGVEKV 517
            E   ++AEAASDQ   +  +SEE  +    + E+  A EE  + + E  +      + V
Sbjct: 555 HEIV-RLAEAASDQVRSIATASEEQSAA---SDEINRAIEEVNRIASETSDAMGQSAQAV 610

Query: 518 ENAISRMQSITNVIDEL 534
                + Q + ++I E+
Sbjct: 611 GELAEQAQQLQSIITEM 627