Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 834 a.a., methyl-accepting chemotaxis protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  127 bits (320), Expect = 2e-33
 Identities = 125/533 (23%), Positives = 238/533 (44%), Gaps = 93/533 (17%)

Query: 257 GTELITAYAPLLDANDDVIGMVFVGAPQTDAIAAKNDARNKIIMLALF------GILIAF 310
           GT L++   P+ D   + +G VFV      A AA  D   K++++AL       GI+ + 
Sbjct: 309 GTALMSF--PVKDYKGEQVG-VFVFVMDNSAAAAIFDTFAKVMLVALLALLVVPGIIFST 365

Query: 311 LITSYSNRKITKPIEELKKGTEEFGNGNYDYKTTVKTGDELQELSDSFNKMAENVKNLMK 370
           L+T    R +   +  ++  TE+  N N D      +G E+ EL   FN++   +++++ 
Sbjct: 366 LLTRVVVRPVGNVVRLIRDITEDRANLN-DRLADTDSG-EVGELCRWFNRLMGKIEDILC 423

Query: 371 TMDMDKLELANLLNNVSDVMNRV-----------AKGDFTARAD-ESRENNKLEKAINTA 418
           +++  K    N++N + D +  V           A      + D E     +     NT+
Sbjct: 424 SVEGYK----NIVNAIPDPVFAVDDDYNILLANNAVARLAGKTDGEQVRGMRCSSIFNTS 479

Query: 419 VSNVADL------IKELREELDLLNIQIQ------------------------------- 441
           V             K+ R E +++ + I                                
Sbjct: 480 VCGTDRCPICQARTKQGRYEAEIIELNIHGKSRWIRPYGDILHDCHGQRAGYLEVASDVT 539

Query: 442 ---KVEDELKG----AEETATQVAEAATQVAEAAS---DQSAKLQESSEEL--------- 482
              + E ELKG     +   T+V E A+QVAEA++   +Q+ ++  S++           
Sbjct: 540 ELYRKETELKGHMSRMQAVNTEVVEVASQVAEASASIEEQTRQVLSSADSQRHLIAESVG 599

Query: 483 ------ESTYENAKEVYSAAEETVKSSEEIKENSEIGVEKVENAISRMQSITNVIDELGK 536
                 ++  E A+    A+++      + +E S I    V +A+  + +++ +   L  
Sbjct: 600 AIGQMNDTIMEVARSAALASQQAGSGQTKAQEGSRI----VSDAVQAIGTVSQLSGVLRT 655

Query: 537 SIKMLGEDGKKINEVTGLIKDIAEQTGLLALNASIEAARAGDAGKGFAVVASEIKALAEE 596
           ++  LG   + I ++  +I DIA+QT LLALNA+IEAARAG+AG+GFAVVA E++ LAE+
Sbjct: 656 NLTELGGQAESIGQIMNVISDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEK 715

Query: 597 IKKSVEDINHTIDGVNSRIEDTVDLGLKGKDEVDKGVIAIDEVNDALLKIKESVNESAIK 656
              + +++  +I+ + S     +    +    V +  +  +    AL +I   VN+++ +
Sbjct: 716 TMNATQEVRRSIETIQSGAARNISSMEEVASAVGQATVLAERSGTALREIVALVNDTSSQ 775

Query: 657 INGIKHGAQNASENTEGALKNAQDIAALSEEFTATAEEVTASTEELNSIIEEI 709
           +  I   A+  S ++E   ++ + ++ALSEE     E+   +  +L  + + +
Sbjct: 776 VTAIATAAEEQSASSEEIKRSVEQVSALSEETAQRMEDAARAVNDLTGLAQRL 828



 Score = 42.4 bits (98), Expect = 1e-07
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 9/168 (5%)

Query: 379 LANLLNNVSDVMNRVAKGDFTARADESRENNKLEKAINTAVSNVADLIKELREELDLLNI 438
           +  ++N +SD+ ++       A  + +R     E     AV  VAD +++L E+      
Sbjct: 667 IGQIMNVISDIADQTNLLALNAAIEAARAG---EAGRGFAV--VADEVRKLAEKTMNATQ 721

Query: 439 QIQK-VEDELKGAEETATQVAEAATQVAEA---ASDQSAKLQESSEELESTYENAKEVYS 494
           ++++ +E    GA    + + E A+ V +A   A      L+E    +  T      + +
Sbjct: 722 EVRRSIETIQSGAARNISSMEEVASAVGQATVLAERSGTALREIVALVNDTSSQVTAIAT 781

Query: 495 AAEETVKSSEEIKENSEIGVEKVENAISRMQSITNVIDELGKSIKMLG 542
           AAEE   SSEEIK + E      E    RM+     +++L    + LG
Sbjct: 782 AAEEQSASSEEIKRSVEQVSALSEETAQRMEDAARAVNDLTGLAQRLG 829