Pairwise Alignments

Query, 732 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 667 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  149 bits (375), Expect = 6e-40
 Identities = 136/556 (24%), Positives = 259/556 (46%), Gaps = 50/556 (8%)

Query: 191 LNNNNEIVDQVKADTGDEATFSLGKQ----RISTSLIE-NGKRPVGTSISDEVWTY-VMS 244
           +N++   VD+    TG  AT  +       RI++SL + +G R +GT +      Y  + 
Sbjct: 108 INSSKSKVDRFANLTGGTATVFVRDGDDFVRIASSLKKADGSRALGTFLGKTHPGYPTLI 167

Query: 245 QNAVYKGTANVLGTELITAYAPLLDANDDVIGMVFVGAPQTDAIAAKNDARNKIIMLALF 304
           +  VY+G A + G + +T Y P+ DA   VIG++++G   T ++     A NKI +    
Sbjct: 168 KGEVYEGYAKLFGKDYMTVYRPIKDAQGQVIGILYIGFEITQSLTQLQAAVNKITLEETG 227

Query: 305 GILIAFLITSY--SNRKIT--KPIEE-------LKKGTEEFGNGNYD---------YKTT 344
             L+     +   +N K    +P+ E       L + T++     Y          Y  T
Sbjct: 228 SFLLMRKADNVLVANPKFNAGEPVTESMLDGLTLSQATQDQSEFRYTNSKNQPMFAYTQT 287

Query: 345 VK----------TGDELQE---LSDSFNKMAENVKNLMKTMDMDKLELANL--LNNVSDV 389
           V             +EL E   L  + N +      ++ T+ +  + + +L  L+ +   
Sbjct: 288 VNGWNWMLIGQVNANELNEESLLLLTINAIVAVTGIVLITVLLSFVLIRSLKPLHALQRH 347

Query: 390 MNRVAKGDFTARADESRENNKLEKAINTAVSNVADLIKELREELDLLNIQIQKVEDELKG 449
           M  +  GDF+     S  +++ E  ++   ++V+ +  ELR+ +  L   +Q +E +   
Sbjct: 348 MEILGTGDFSHPLPPSAYDSQNE--VDKITTSVSTMSSELRQLISALQASVQSIEQQASK 405

Query: 450 AEETATQVAEAATQVAEAASDQSAKLQESSEELESTYENAKEVYSAAEETVKSSEEIKEN 509
           A+  A Q  E A    +A   Q+ ++  + EE+ ++    ++V + A++    S+++   
Sbjct: 406 AQRIAKQNGEEA----QALMQQTDQIATAIEEMSTSI---RDVANHAQDGANQSQQVDLA 458

Query: 510 SEIGVEKVENAISRMQSITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNA 569
           ++ G ++    +  +  ++  +    ++++ + ++ + I++VT +I  IAEQT LLALNA
Sbjct: 459 AKEGQQQQTQVVQDLLKLSQQLSSSHQAVEKVSQESEAISKVTEVINSIAEQTNLLALNA 518

Query: 570 SIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIEDTVDLGLKGKDEV 629
           +IEAARAG+ G+GFAVVA E++ LA+  + S+ +I+ TID + S+++ T     +     
Sbjct: 519 AIEAARAGEQGRGFAVVADEVRTLAQRTQSSILEISQTIDKLQSQVKTTTSQMAQSHQLG 578

Query: 630 DKGVIAIDEVNDALLKIKESVNESAIKINGIKHGAQNASENTEGALKNAQDIAALSEEFT 689
                  +E    L +I   + E AI    I    +  S   +    N   I+ L+ E  
Sbjct: 579 IASANQGEETGKQLEEITRRIGELAISSRNIASATEQQSSVAQEITHNLHQISELANEGE 638

Query: 690 ATAEEVTASTEELNSI 705
             A E   S  +L+S+
Sbjct: 639 HRAAETVNSANDLSSL 654



 Score = 62.8 bits (151), Expect = 6e-14
 Identities = 118/651 (18%), Positives = 258/651 (39%), Gaps = 67/651 (10%)

Query: 17  SIISVLVPILVFGFVANDTIAGILDDNAQKSINTDIKIADQIIESRFIEFESICEYATNK 76
           + I  L+   +   ++  + + +L+D    ++  ++     ++E   ++++S+ + A   
Sbjct: 16  AFILTLIIFCILSTLSYKSASNVLEDKGISAMKAEMHAVSDMLE---LQYDSLLQLARRN 72

Query: 77  ADVITSV-----SNKDSEKLSIGVET-----FRAAINSDFVGVLDSNGNTIASTAGPDIQ 126
           ADV   +     S  D     +GV T      +  INS    V D   N    TA   ++
Sbjct: 73  ADVFKEMYPGQFSRPDKTVNVLGVSTPALLHEKEQINSSKSKV-DRFANLTGGTATVFVR 131

Query: 127 IGSVAQKLITSGTKRSFEPISANTAYKINKNYKV-------ENVDSALG---MVVTYPIY 176
            G    ++ +S  K            K +  Y         E      G   M V  PI 
Sbjct: 132 DGDDFVRIASSLKKADGSRALGTFLGKTHPGYPTLIKGEVYEGYAKLFGKDYMTVYRPIK 191

Query: 177 E-NGNVVGSIII-IDILNNNNEIVDQVKADTGDEATFSLGKQRISTSLIENGKRPVGTSI 234
           +  G V+G + I  +I  +  ++   V   T +E    L  ++    L+ N K   G  +
Sbjct: 192 DAQGQVIGILYIGFEITQSLTQLQAAVNKITLEETGSFLLMRKADNVLVANPKFNAGEPV 251

Query: 235 SDEVWTYVMSQNAV-------YKGTANVLGTELITAYAPLLDA-NDDVIGMVFVGAPQTD 286
           ++ +   +    A        Y  + N    + + AY   ++  N  +IG V       +
Sbjct: 252 TESMLDGLTLSQATQDQSEFRYTNSKN----QPMFAYTQTVNGWNWMLIGQVNANELNEE 307

Query: 287 AIAAKNDARNKIIMLALFGILIAFLITSYSNRKITKPIEELKKGTEEFGNGNYDY---KT 343
           ++       N I+  A+ GI++  ++ S+   +  KP+  L++  E  G G++ +    +
Sbjct: 308 SLLLLTI--NAIV--AVTGIVLITVLLSFVLIRSLKPLHALQRHMEILGTGDFSHPLPPS 363

Query: 344 TVKTGDELQELSDSFNKMAENVKNLMKTMDMDKLELANLLNNVSDVMNRVAKGDFTARAD 403
              + +E+ +++ S + M+  ++ L+  +          +   +    R+AK       +
Sbjct: 364 AYDSQNEVDKITTSVSTMSSELRQLISALQAS----VQSIEQQASKAQRIAK----QNGE 415

Query: 404 ESRENNKLEKAINTAVSNVADLIKELREELDLLNIQIQKVEDELKGAEETATQVAEAATQ 463
           E++   +    I TA+  ++  I+++         Q Q+V+   K  ++  TQV +   +
Sbjct: 416 EAQALMQQTDQIATAIEEMSTSIRDVANHAQDGANQSQQVDLAAKEGQQQQTQVVQDLLK 475

Query: 464 VAEAASDQSAKLQESSEELESTYENAKEVYSAAEET----VKSSEEIKENSEIG------ 513
           +++  S     +++ S+E E+  +  + + S AE+T    + ++ E     E G      
Sbjct: 476 LSQQLSSSHQAVEKVSQESEAISKVTEVINSIAEQTNLLALNAAIEAARAGEQGRGFAVV 535

Query: 514 VEKVENAISRMQS----ITNVIDELGKSIKMLGEDGKKINEVTGLIKDIAEQTGLLALNA 569
            ++V     R QS    I+  ID+L   +K       + +++     +  E+TG      
Sbjct: 536 ADEVRTLAQRTQSSILEISQTIDKLQSQVKTTTSQMAQSHQLGIASANQGEETGKQLEEI 595

Query: 570 SIEAARAGDAGKGFAVVASEIKALAEEIKKSVEDINHTIDGVNSRIEDTVD 620
           +        + +  A    +  ++A+EI  ++  I+   +    R  +TV+
Sbjct: 596 TRRIGELAISSRNIASATEQQSSVAQEITHNLHQISELANEGEHRAAETVN 646