Pairwise Alignments

Query, 250 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 254 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis JJ

 Score =  148 bits (373), Expect = 1e-40
 Identities = 85/245 (34%), Positives = 136/245 (55%), Gaps = 5/245 (2%)

Query: 7   LIISTIFLIVFSGCTEDNTGANNQV----LTVGVCTDLAPTSYIEDGEFKGFEVELIYEI 62
           +I S + L  FSGC        N V    LTVG+  ++ P  Y E+GE KGF+++L+ EI
Sbjct: 9   IISSVLILTSFSGCISSYGKEYNTVTPGVLTVGITPEMPPQQYYEEGELKGFDIDLMKEI 68

Query: 63  SKRLDLQPEFVVYSFSELLDAVSEGEVDCGIGYIGKTPERQLKMDFSRPYGYTYSTILVR 122
           +  + L+PEF +Y +    +A+  GE+DC +  +  +PER+  MDFSR Y  TY  + V 
Sbjct: 69  ANNMGLKPEFKIYEYGGAHEALLNGEIDC-LPSMTISPERKEDMDFSRAYIQTYVVVAVF 127

Query: 123 SDSNCVGIKCLENKSVGVLKDSIEEYWLESLLKSMDFKIIIYENQNDINNDLLSGKIDSE 182
            +S    +K L  K++ V+ ++  E W +  L S++  I  Y++   + +D+ S  ID+ 
Sbjct: 128 ENSPYRELKDLNGKNIAVVTNTYTEDWAKDYLGSINANIKSYDSIQGLVSDIYSKNIDAV 187

Query: 183 VTDHITSLYLIQDYDTELKIVGDKFDIIYVAIAIDNTNPELKKSIDVALLEMENDGTLVK 242
           VTD I   Y  +    E +++ +K  I Y AIA+   N +L+  I+ AL E+E +  L +
Sbjct: 188 VTDQIQLDYYSKQKSFESRLIFEKMTIEYWAIAVKKDNHDLQNEINDALFELEENEALYE 247

Query: 243 LKEKW 247
           LK KW
Sbjct: 248 LKNKW 252