Pairwise Alignments

Query, 250 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 240 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis JJ

 Score =  142 bits (359), Expect = 5e-39
 Identities = 83/237 (35%), Positives = 136/237 (57%), Gaps = 6/237 (2%)

Query: 5   KFLIISTIFLIVFSGCTEDN---TGANNQVLTVGVCTDLAPTSYIEDGEFKGFEVELIYE 61
           K +I S + +I    C   +   T     VLTVGV   + P  Y E+GE KG+EV+LI E
Sbjct: 3   KMVIFSVLLVITSCACISSDSNPTTLKEGVLTVGVFKYVPPAVYEENGELKGYEVDLISE 62

Query: 62  ISKRLDLQPEFVVYSFSELLDAVSEGEVDCGIGYIGKTPERQLKMDFSRPYGYTYSTILV 121
           I+KR+DL+ E+  Y FS+LL+AV+  EVDC I  +  TPER+  + FSR Y  T   +++
Sbjct: 63  IAKRMDLKVEYKEYRFSDLLNAVANNEVDCAISDLAVTPEREKIVSFSRAYSKTDIILVI 122

Query: 122 RSDSNCVGIKCLENKSVGVLKDSIEEYWLESLLKSMDFKIIIYENQNDINNDLLSGKIDS 181
             DS+   +  +  + VGV   +I++     LLKS+DF++  Y   +++ + L SG +D+
Sbjct: 123 PKDSDIEKLTDIVGQKVGVTAGTIDDDKSSELLKSIDFQVCRYATHDELYDALESGNVDA 182

Query: 182 EVTDHITSLYLIQDYDTELKIVGDKFDIIYVAIAIDNTNPELKKSIDVALLEMENDG 238
            +++   +   +Q  ++ +K + +    IY  IA++  N ELK  I+  +LE+E +G
Sbjct: 183 IISEK-NNFDTVQ--NSGIKCLNEPIATIYSGIAVNKNNKELKSKINDIILELEQEG 236



 Score = 27.3 bits (59), Expect = 3e-04
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 23/123 (18%)

Query: 150 LESLLKSMDFKIIIYENQ-NDINNDLLSGKIDSEVTDHI-----------------TSLY 191
           +  + K MD K+   E + +D+ N + + ++D  ++D                   T + 
Sbjct: 60  ISEIAKRMDLKVEYKEYRFSDLLNAVANNEVDCAISDLAVTPEREKIVSFSRAYSKTDII 119

Query: 192 LIQDYDTELK----IVGDKFDIIYVAIAIDNTNPELKKSIDVALLEMENDGTLVKLKEKW 247
           L+   D++++    IVG K  +    I  D+ + EL KSID  +        L    E  
Sbjct: 120 LVIPKDSDIEKLTDIVGQKVGVTAGTID-DDKSSELLKSIDFQVCRYATHDELYDALESG 178

Query: 248 NID 250
           N+D
Sbjct: 179 NVD 181