Pairwise Alignments

Query, 184 a.a., recombinase family protein from Methanococcus maripaludis S2

Subject, 208 a.a., site-specific recombinase, resolvase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 71.6 bits (174), Expect = 8e-18
 Identities = 50/192 (26%), Positives = 97/192 (50%), Gaps = 12/192 (6%)

Query: 5   YARVSTKDQNLERQ----LDELKKAGSEKIFLEKISGTKRNRPEFDKMFDILRA---GDI 57
           Y RVST  Q+++ Q    L+   + G   +   + + + +++    K+ D+L +    D+
Sbjct: 6   YLRVSTDAQDVDNQKHGILEFANQHGLSNLSFVEDTVSGKHKWRARKLGDLLESLAPKDV 65

Query: 58  IIVTELTRISRSTKDLVEIVESCKSLGVEIKSLKESWLDTTSAHGKLLFTIFAGLAEFER 117
           I+  E++R++RST  ++EI+E C    + +   K+  +   S   ++  T+    AE ER
Sbjct: 66  IVFAEVSRMARSTLQVLEILEFCTERQIHVYIAKQKMILDDSMQSRITATVLGLAAEIER 125

Query: 118 DLISERVKSGLNAARSRGRLGGRPKIDSEKVEM-----ALKMYDSKEYTIKQILKATGIS 172
           + IS R K  L A ++ G   GRP   +EK ++     A++ Y  K  +I+ I K     
Sbjct: 126 EFISLRTKEALAARKAAGMKLGRPAGQAEKTKLDKHRKAIESYLDKGLSIRSIAKLIDEP 185

Query: 173 KFTLYNYLEKRT 184
             T+ +Y+++ +
Sbjct: 186 STTVNDYIKRHS 197