Pairwise Alignments

Query, 184 a.a., recombinase family protein from Methanococcus maripaludis S2

Subject, 211 a.a., site-specific recombinase, resolvase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 54.3 bits (129), Expect = 1e-12
 Identities = 52/207 (25%), Positives = 83/207 (40%), Gaps = 32/207 (15%)

Query: 2   IIGYARVSTKDQNLERQLDELKKAGSEKIF------LEKISGTKRNRPEFDKMFDILRAG 55
           I GY R ST DQN +R    L+K   ++ F      +E  SG    RPE  ++ D    G
Sbjct: 3   IFGYLRASTSDQNAKRAQSTLQKFVQDRGFRIAGWYIENESGASLQRPELLRLLDDAAKG 62

Query: 56  DIIIVTELTRISR-STKDLVEIVESCKSLGVEIKSLKESWLDTTSAH------------- 101
           D II+ ++ R+SR   K    + E         K LK   LD  ++H             
Sbjct: 63  DAIIIEQIDRLSRLDEKSWFTLKEMLHG-----KELKVISLDLPTSHIALSPQITDEFTG 117

Query: 102 ------GKLLFTIFAGLAEFERDLISERVKSGLNAARSRGRLGGRPKIDSEKVEMALKMY 155
                   ++  + A +A  +      R   G+  A+  G+  GR + DS+  E   ++ 
Sbjct: 118 SMIKAINSMMMDMLAAIARKDYQDRRRRQAEGIKKAKEGGKYRGR-QADSDLHEKIYQLR 176

Query: 156 DSKEYTIKQILKATGISKFTLYNYLEK 182
              + +I    K T +S  T+    +K
Sbjct: 177 VVNKLSISDTAKLTNVSDRTVIRVAKK 203