Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 298 a.a., tyrosine recombinase XerD from Pseudomonas stutzeri RCH2

 Score = 49.7 bits (117), Expect = 9e-11
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%)

Query: 155 LRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEETVEIVRD 214
           LRD  ++ VL+  G R +E +S+  +     +G  R    K  +ER V + +E +  +  
Sbjct: 134 LRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFG-KGNKERLVPLGDEALHWLER 192

Query: 215 YIKEN----IKRDSNDYIFQNEMIQNGKRVKLDWITN--VFKKAVRKLKEEGVIPEGKRI 268
           Y +E     +   + D +F +        ++ D +T    + +     K  G+      I
Sbjct: 193 YQREGRDELLGGKARDVLFPS--------LRGDQMTRQTFWHRIKLHAKVAGIATS---I 241

Query: 269 VIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSH 308
             H+LRH  AT LL+ G  +  V+ +LGH  L TT  Y+H
Sbjct: 242 SPHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTH 281