Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

 Score = 69.3 bits (168), Expect = 1e-16
 Identities = 75/296 (25%), Positives = 128/296 (43%), Gaps = 50/296 (16%)

Query: 63  KEPYSLTTHDFVIFFNMLNNRRNCTVRTQNRYFNLLKVFYR-LLKYVNFKEFERESIERK 121
           K P  +   +   F   L  +     +TQ+   N L   Y+ +LK     E       R 
Sbjct: 40  KHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKEILKTPLSLEI------RF 93

Query: 122 RFSKFEKKHYDTINFDTYNRIIKEIILSNSRTRLRDALIVRVLWETGCRRSEALSIRYKD 181
           + S+ E+K    +  D   R+++ +   +        L +++L+ +G R  E + +R +D
Sbjct: 94  QRSQLERKLPVVLTRDEIRRLLEIVDPKHQ-------LPIKLLYGSGLRLMECMRLRVQD 146

Query: 182 CDFEKGRFRIRDTKTYEERTVVIAEETVEIVRDYI---KENIKRDSND------------ 226
            DF+ G  RI   K  + RTV +A+E    +++ I   K    RD +             
Sbjct: 147 IDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTAL 206

Query: 227 --------YIFQNEMIQNGKRVKLDWITNVFK----------KAVRKLKEEGVIPEGKRI 268
                   Y F+   +    ++ LD  ++V +          KAVR+  +E  I   K +
Sbjct: 207 KEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIE--KTV 264

Query: 269 VIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKER-KNGMLDNIQKL 323
             H+LRH  AT LL+ G  I  V+E LGH  ++TT  Y+H  +R  +G+L  + +L
Sbjct: 265 TCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRGASGVLSPLSRL 320