Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 61.6 bits (148), Expect = 2e-14
 Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 17/175 (9%)

Query: 151 SRTRLRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEETVE 210
           S   LRD  ++ +L+ TG R +E +S+  ++    +G  R+   K  +ER V + E  +E
Sbjct: 133 SPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMG-KGGKERLVPMGENAIE 191

Query: 211 IVRDYIKEN----IKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIP--E 264
            +  ++++     +   ++D +F +   Q   R    W          ++K   VI   +
Sbjct: 192 WIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTF-W---------HRIKHYAVIAGID 241

Query: 265 GKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKERKNGMLDN 319
            +++  H LRH  AT LL+ G  + VV+ +LGH  L TT  Y+H    +   L N
Sbjct: 242 VEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHN 296