Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 330 a.a., site-specific tyrosine recombinase XerC from Sinorhizobium meliloti 1021

 Score = 47.8 bits (112), Expect = 4e-10
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 13/154 (8%)

Query: 156 RDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRI--RDTKTYEERTVVIAEETVEIVR 213
           R+A ++ +L+  G R +EAL +   D        R+  +  KT     +  A E VE  R
Sbjct: 170 RNAAVLTLLYGCGLRIAEALDLTPADFSGPVTSLRVTGKGGKTRIVPMIAAAAEAVETYR 229

Query: 214 DYIKENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEGKRIVIHSL 273
                +I+ +         + +  +  KL     + ++ ++KL+    +P+      H+L
Sbjct: 230 KLCPYHIEPEE-------PIFRGARGAKLQ--PAIIQREMQKLRAALGLPDSA--TPHAL 278

Query: 274 RHGRATDLLDKGVPIDVVKEILGHRSLETTLYYS 307
           RH  AT LL  G  +  ++E+LGH SL TT  Y+
Sbjct: 279 RHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT 312