Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 311 a.a., site-specific tyrosine recombinase XerD from Sinorhizobium meliloti 1021

 Score = 58.5 bits (140), Expect = 2e-13
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 12/169 (7%)

Query: 154 RLRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEETVEIVR 213
           +LR   ++ +L+ TG R SE +S+       + GRF I   K  +ER V +++  +  +R
Sbjct: 140 KLRMHALIELLYATGMRVSELVSLPASVLA-QNGRFLIIRGKGNKERLVPLSQAAIRAMR 198

Query: 214 DYIKENIKRDSND--YIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEGKRIVIH 271
            Y  E ++ +S D  ++F +    NGK   L     VF + ++ L     I     I  H
Sbjct: 199 AY-GEALQEESADSPWLFPS----NGKSGHLP--RQVFARDLKSLAARAGIRVAA-ISPH 250

Query: 272 SLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSH-SKERKNGMLDN 319
            LRH  A+ LL  G  +  V+E+LGH  + TT  Y+H  +ER + ++ N
Sbjct: 251 VLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQN 299