Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 321 a.a., integrase/recombinase XerD (RefSeq) from Shewanella amazonensis SB2B

 Score = 52.0 bits (123), Expect = 2e-11
 Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 14/164 (8%)

Query: 149 SNSRTRLRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEET 208
           S+     RD  ++ +L+ TG R SE + +   +    +G  RI   K  +ER V + E  
Sbjct: 151 SDDPVECRDKAMLELLYATGLRVSELVGLGMSELGLRQGLVRIIG-KGGKERLVPMGEVA 209

Query: 209 VEIVRDYI----KENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPE 264
            + +  ++    +  +K+ + + +F +   Q   R        ++  A+R     G+  E
Sbjct: 210 QDALEQFLAGPRQMLLKQGATEVVFPSNRGQQMTRQTFWHRIKLY--ALRA----GISTE 263

Query: 265 GKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSH 308
              +  H+LRH  AT LL+ G  + VV+ +LGH SL TT  Y+H
Sbjct: 264 ---LSPHTLRHAFATHLLNHGADLRVVQLLLGHSSLSTTQIYTH 304