Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 318 a.a., phage integrase family site specific recombinase (RefSeq) from Shewanella amazonensis SB2B

 Score = 57.8 bits (138), Expect = 4e-13
 Identities = 58/290 (20%), Positives = 116/290 (40%), Gaps = 50/290 (17%)

Query: 51  LKVFLAFCEEIGKEPYSLTTHDFVIFFNMLNNRRNCTVRTQNRYFNLLKVFYRLLKYVNF 110
           +K ++ F ++  + P ++ + +   F   L   R+    TQ    N L   Y+    +  
Sbjct: 31  IKFYILFNQK--RHPDTMGSAEITAFLTYLAVERHVAANTQKVALNALIYLYQKFLQIEL 88

Query: 111 KEFERESIERKRFSKFEKKHYDTINFDTYNRIIKEIILSNSRTRLRDALIVRVLWETGCR 170
            E       ++R          ++        +  I+   S   L    ++++L+ +G R
Sbjct: 89  GELPFSLATKQR----------SLPIVVTQTEVAHILAKLSGVHLH---VIQMLYGSGLR 135

Query: 171 RSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEETVEIVRDYIKENIKRDSND---- 226
            +E L +R +D D E+    + D K  ++R  +++   +  + D I+ ++     D    
Sbjct: 136 VTECLRLRVQDVDLERLSVTVHDGKGNKDRQTLLSRSCLNWLPDQIEHSLNIQQKDNQRG 195

Query: 227 -----------------------YIFQNEMIQ----NGKRVKLDWITNVFKKAVR-KLKE 258
                                  Y+F +  +      G+  +     +  +KA+R  ++ 
Sbjct: 196 IGPSMPTALSVKYPNAFREPGWMYLFPSSGLCPHPITGEICRHHLHDSAIRKALRIAVRH 255

Query: 259 EGVIPEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSH 308
            GV    K++  H+ RH  AT LL  G  I  V+E+LGH  ++TT  Y+H
Sbjct: 256 AGV---RKKVNCHTFRHSFATHLLQAGYDIRTVQELLGHNDVKTTQIYTH 302