Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 330 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score = 50.8 bits (120), Expect = 4e-11
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 12/153 (7%)

Query: 156 RDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEETVEIVRDY 215
           RD  +  +L+  G R  EAL +   D     G       K  +ER V +    VE + DY
Sbjct: 170 RDLALFTLLYGCGLRLGEALDLDRGD--LPSGEVMRITGKGRKERLVPLLPVVVEALADY 227

Query: 216 IKE-NIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEGKRIVIHSLR 274
           +         +D +F       GKR+       V ++ +R+L+    +PE      H+LR
Sbjct: 228 LAACPFAGGPDDPLFLGS---RGKRLN----PGVVQRQMRRLRGFLGLPE--TATPHALR 278

Query: 275 HGRATDLLDKGVPIDVVKEILGHRSLETTLYYS 307
           H  AT LL +G  +  ++E+LGH SL TT  Y+
Sbjct: 279 HSFATHLLAQGGDLRTIQELLGHASLSTTQRYT 311