Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 392 a.a., putative phage integrase, catalytic core from Phaeobacter inhibens DSM 17395

 Score = 48.1 bits (113), Expect = 3e-10
 Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 20/148 (13%)

Query: 162 RVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEETVEIVRDYIKENIK 221
           R+L  TGCR  E  ++++ D   + G   + DTKT   R  +      +  RD +    +
Sbjct: 232 RLLILTGCRLGEIQTLKW-DYITDTG-MELPDTKTGARRIPL-----PQPARDVLTHLPR 284

Query: 222 RDSNDYIFQNEMI-QNGKRVKLDWITNVFKKAVRKLKEEGVIPEGKRIVIHSLRHGRATD 280
              N Y+ + ++  Q    ++  W         R+++    +     + IH LRH  A++
Sbjct: 285 TPGNPYVIEGKLAGQYATDLQHPW---------RRIRARAGLAG---VRIHDLRHTYASN 332

Query: 281 LLDKGVPIDVVKEILGHRSLETTLYYSH 308
            +  G+PI +V  +LGH  ++TT+ Y+H
Sbjct: 333 AVSSGMPIQMVGRLLGHSQIQTTMRYAH 360