Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 303 a.a., tyrosine recombinase XerD (RefSeq) from Shewanella loihica PV-4

 Score = 58.5 bits (140), Expect = 2e-13
 Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 16/217 (7%)

Query: 97  LLKVFYRLLKYVNFKEF-ERESIERKRFSKFEKKHYDTINFDTYNRIIKEIILSNSRTRL 155
           LL    R  KY+  K+  E + +   +  K  +K  D ++    +R++ E    +     
Sbjct: 81  LLSSLRRFYKYLLAKKLIEVDPMAMIKPPKLARKLPDALSEADVDRLLSEPNREDP-VEA 139

Query: 156 RDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEETVEIVRDY 215
           RD  ++ +L+ +G R SE + +        +G  RI   K  +ER V   E+    + DY
Sbjct: 140 RDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVG-KGSKERLVPFGEQAGAEIEDY 198

Query: 216 IK----ENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEGKRIVIH 271
           +K    E +K  ++D +F +      KR  +      + +     +  G+      +  H
Sbjct: 199 LKAARFELLKGKASDVVFPS------KRGNMMTRQTFWHRIKLYAQRAGI---AVHLSPH 249

Query: 272 SLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSH 308
           +LRH  AT LL+ G  + VV+ +LGH  L TT  Y+H
Sbjct: 250 TLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTH 286