Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 322 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis JJ

 Score =  332 bits (852), Expect = 6e-96
 Identities = 161/325 (49%), Positives = 233/325 (71%), Gaps = 4/325 (1%)

Query: 1   MNELEKKLLYGTKSDPAVTTEEQNIYIKKFQEEREFDNIKPSTIKNDVTSLKVFLAFCEE 60
           M +L+ KL++    +    +E+ N ++ KF+EEREFD I  +T+  DV  LK+FL F E+
Sbjct: 1   MQDLKNKLVFKPNRENPEESEKMNKWLVKFKEEREFDGIMKNTMTTDVVRLKIFLDFVEK 60

Query: 61  -IGKEPYSLTTHDFVIFFNMLNNRRNCTVRTQNRYFNLLKVFYRLLKYVNFKEFERESIE 119
            + KEP ++   DF+ FFN LN  R  +  TQNRYFNLLKVFYR ++  NF +F  ESIE
Sbjct: 61  RLEKEPDNMRNSDFIQFFNYLNTERKLSKSTQNRYFNLLKVFYRTMRLSNFLDFSDESIE 120

Query: 120 RKRFSKFEKKHYDTINFDTYNRIIKEIILSNSRTRLRDALIVRVLWETGCRRSEALSIRY 179
           RKRFS+ E KHYD I+    N +I+ I+   S+T++RDAL++R+LW+TGCR SE ++++Y
Sbjct: 121 RKRFSRSEVKHYDAISEAELNEVIQSIVDGKSKTQIRDALVIRLLWDTGCRLSEVINLKY 180

Query: 180 KDCDFEKGRFRIRDTKTYEERTVVIAEETVEIVRDYIKENIKRDSNDYIFQNEMIQNGKR 239
           +DCDF++G F++++TK   ERTV  +++T++++  Y + N      +YIFQ      GK 
Sbjct: 181 EDCDFKEGIFKLKNTKGKVERTVTCSKDTLDVLNQYKQYNPNSKPENYIFQT---IEGKI 237

Query: 240 VKLDWITNVFKKAVRKLKEEGVIPEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRS 299
           ++ +WI+ VF++ V+KLKE+G+I   +R+V HSLRHGRA D LDKGVPID+VKE LGH S
Sbjct: 238 IRKNWISKVFREHVKKLKEKGIIARNRRLVTHSLRHGRAVDFLDKGVPIDIVKEYLGHAS 297

Query: 300 LETTLYYSHSKERKNGMLDNIQKLL 324
           LETTL+YSHS+ERK+ ML +++KLL
Sbjct: 298 LETTLFYSHSRERKDKMLKDLKKLL 322