Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 295 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis JJ

 Score = 59.3 bits (142), Expect = 1e-13
 Identities = 64/276 (23%), Positives = 125/276 (45%), Gaps = 23/276 (8%)

Query: 42  STIKNDVTSLKVFLAFCEEIGKEPYSLTTHDFVIFFNMLNNRRNCTVRTQNRYFNLLKVF 101
           +T+K   + LK F  + +E  K   ++T  D + F+N  N   +     +N     L   
Sbjct: 22  NTVKYYKSGLKAFTRYFDE-NKTWENITIEDAINFYNGYNKAEDGRPVNKNTKIKRLNDV 80

Query: 102 YRLLKYVNFKEFERESIERKRFSKFEKKHYDTINFDTYNRI-IKEIILSNSRTRLRDA-- 158
            R  ++      E + + +     F K    T+ F+   R+ + E  +     ++ D   
Sbjct: 81  NRFYEWA----VEHQYLFKNPVKTFVK----TLKFEKKERLNLSEKQVQTVLAKVMDYDY 132

Query: 159 -LIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEETVEIVRDYI- 216
            +    L +TG R SE  +I   D D E     IRD K  ++R V I  E +  +++YI 
Sbjct: 133 YVYTLFLLKTGVRISEFQNILLNDVDLEDRSIYIRDGKGGKDRYVFIDNELLGYLKNYIE 192

Query: 217 -KENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEGKRIVIHSLRH 275
            +EN+   ++ +     + +NGK+V  ++  + F+  ++++ ++ +  +   +  H  RH
Sbjct: 193 YRENLNLKTDCFF----VTKNGKKV-TNYAIDKFRDYLKEVTKDKIPFD---VTPHVFRH 244

Query: 276 GRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKE 311
              T   +  + + V+ +I+GH +L TT  Y HS +
Sbjct: 245 TFGTLACEDEMNLIVLSKIMGHSNLNTTSGYVHSNK 280