Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 182 a.a., site-specific integrase from Methanococcus maripaludis JJ

 Score = 58.9 bits (141), Expect = 9e-14
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 17/149 (11%)

Query: 159 LIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEETVEIVRDYIKE 218
           L  ++L+    R SE L+I  K+ +  +G  ++ DTKT   +  VI E   E +  +I +
Sbjct: 29  LFFKMLYGMALRVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIPEWLNEDIFGHIVD 88

Query: 219 N-IKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEGKRIVIHSLRHGR 277
           N +K D   + F+N            W      + V+K  ++  I   K    H+ R  R
Sbjct: 89  NNLKDDDRLFKFKNRTYA--------W------ELVKKYTKDAKIH--KEFSTHTFRRSR 132

Query: 278 ATDLLDKGVPIDVVKEILGHRSLETTLYY 306
           A  LL+ GVP++ V + L H+S+ TT++Y
Sbjct: 133 ALHLLNDGVPLEKVSKYLRHKSINTTMHY 161