Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 322 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis JJ

 Score =  332 bits (851), Expect = 7e-96
 Identities = 165/323 (51%), Positives = 230/323 (71%), Gaps = 3/323 (0%)

Query: 3   ELEKKLLYGTKSDPAVTTEEQNIYIKKFQEEREFDNIKPSTIKNDVTSLKVFLAFCE-EI 61
           ++EK +    K D    T +   ++ +F+EEREFD IK +T++ND+T L+VFL+F   EI
Sbjct: 2   DIEKLISIKPKRDEVKETPQIREWLDRFREEREFDGIKKTTLRNDITRLRVFLSFVFLEI 61

Query: 62  GKEPYSLTTHDFVIFFNMLNNRRNCTVRTQNRYFNLLKVFYRLLKYVNFKEFERESIERK 121
            K P      DFV FFN L   R     T ++YF LLKVFYRL++  NF +FE ES ERK
Sbjct: 62  EKTPEITNNGDFVKFFNYLEKERKLQRNTLDKYFKLLKVFYRLMRLKNFSQFEEESKERK 121

Query: 122 RFSKFEKKHYDTINFDTYNRIIKEIILSNSRTRLRDALIVRVLWETGCRRSEALSIRYKD 181
           R+SKFE KHYD+IN D  N+++++II S+SRT+LRDA+ +R LW+TG R SE+L+I Y D
Sbjct: 122 RYSKFEIKHYDSINADLINQVLQKIIKSSSRTKLRDAVHIRFLWDTGARLSESLNITYGD 181

Query: 182 CDFEKGRFRIRDTKTYEERTVVIAEETVEIVRDYIKENIKRDSNDYIFQNEMIQNGKRVK 241
           CDF +G F++RDTK  EER V  + +T+E ++ Y + N+ +   D IFQ    + G+ VK
Sbjct: 182 CDFNEGLFKLRDTKGSEERMVTCSGDTLEALKHYCRFNVLQGPEDTIFQTN--KGGRIVK 239

Query: 242 LDWITNVFKKAVRKLKEEGVIPEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLE 301
           + WI  VFK  + +LK+EG IP+ KRIV+HSLRHGRA DLLD+G+PI++VKE LGH+S+E
Sbjct: 240 VGWIGQVFKSTIDELKQEGKIPKNKRIVVHSLRHGRAVDLLDQGIPIEIVKEYLGHKSIE 299

Query: 302 TTLYYSHSKERKNGMLDNIQKLL 324
           TTL+Y+HSKER+  M+ +I+K+L
Sbjct: 300 TTLFYAHSKERQQKMIKDIKKML 322